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Report for CCDS56874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56874.1 Public Mus musculus 13 Prl3d1 23 108 98 CCDS HistoryNCBI Gene:18775Re-query CCDS DB by CCDS ID:56874.1Re-query CCDS DB by GeneID:18775See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225330.1 ENSMUSP00000152890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225330.1Link to Ensembl Protein Viewer:ENSMUSP00000152890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225330Re-query CCDS DB by Protein ID:ENSMUSP00000152890
Original member Current member NCBI NM_001205322.1 NP_001192251.1 Accepted alive Link to Nucleotide Sequence:NM_001205322.1Link to Protein Sequence:NP_001192251.1Re-query CCDS DB by Nucleotide ID:NM_001205322Re-query CCDS DB by Protein ID:NP_001192251Link to BLAST:NP_001192251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192251.1 224 P18121 224 99.1071% 0 2

Chromosomal Locations for CCDS 56874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27094253 27094283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27094852 27095009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27096456 27096563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27098575 27098754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27099924 27100121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCAGCTGACTTTGAATCTTTCAGGCTCCGCAGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCC
TTTGGGAGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCACTGAAGACCTGTATACTCGTTTGGCTGA
ACTGTCTCATAATACATTTATCTTGGCCGCAGATGTGTATAGGGAATTTGATTTGGATTTTTTCGATAAA
ACTTGGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGG
AAGTCCACGAAACTAAAACTGAAGACCTTCTGAAAGCAATGATCAATGTTTCAATTTCCTGGAAAGAACC
TCTGAAACACCTGGTGTCTGCACTGACGGCTCTCCCAGGAGCTTCTGAGAGTATGGGGAAAAAAGCTGCT
GACATTAAGGGCAGAAACCTTGTAATTCTGGAGGGACTTCAGACAATATACAACAGGACTCAGGCTAACA
TTGAAGAAAATGAAAATTTTGACTACCCTGCTTGGTCTGGACTCGAAGAACTGCAGTCACCTAATGAAGA
CACTCATCTTTTTGCCGTTTATAATCTATGCCGCTGCATTAAAAGGGACATCCATAAGATAGACAGCTAT
ATCAAAGTCTTGAGGTGCCGAGTTGTCTTTCAGAACGAATGTTGA

Translation (224 aa):
MQLTLNLSGSAGMQLLLLVSSLLLWENVSSKPTAMVPTEDLYTRLAELSHNTFILAADVYREFDLDFFDK
TWITDRTLPLCHTASIHTPENREEVHETKTEDLLKAMINVSISWKEPLKHLVSALTALPGASESMGKKAA
DIKGRNLVILEGLQTIYNRTQANIEENENFDYPAWSGLEELQSPNEDTHLFAVYNLCRCIKRDIHKIDSY
IKVLRCRVVFQNEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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