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Report for CCDS15314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15314.1 Public Mus musculus 1 Lgr6 23 108 98 CCDS HistoryNCBI Gene:329252Re-query CCDS DB by CCDS ID:15314.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044828.13 ENSMUSP00000035444.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044828.13Link to Ensembl Protein Viewer:ENSMUSP00000035444.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044828Re-query CCDS DB by Protein ID:ENSMUSP00000035444
Original member NCBI NM_001033409.3 NP_001028581.1 Updated not alive Link to Nucleotide Sequence:NM_001033409.3Link to Protein Sequence:NP_001028581.1Re-query CCDS DB by Nucleotide ID:NM_001033409Re-query CCDS DB by Protein ID:NP_001028581
Current member NCBI NM_001033409.4 NP_001028581.1 Accepted alive Link to Nucleotide Sequence:NM_001033409.4Link to Protein Sequence:NP_001028581.1Re-query CCDS DB by Nucleotide ID:NM_001033409Re-query CCDS DB by Protein ID:NP_001028581Link to BLAST:NP_001028581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028581.1 967 Q3UVD5 967 100% 0 0

Chromosomal Locations for CCDS 15314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134986936 134988191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134990605 134990685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134993869 134994029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134995984 134996109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134997653 134997724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134998185 134998256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134999314 134999379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135000478 135000549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135001700 135001768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135003200 135003271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135003458 135003529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135005691 135005759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135021775 135021846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135027052 135027267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135063621 135063692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135072885 135072956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135075227 135075298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135104929 135105140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2904 nt):
ATGCACAGCCCGCCTGGGCTCCTGGCGCTGTGGCTTTGCGCTGTGCTGTGCGCATCGGCGCGCGCGGGCA
GCGACCCCCAGCCTGGCCCGGGGCGTCCCGCCTGCCCGGCTCCCTGCCACTGCCAGGAGGACGGCATCAT
GCTGTCCGCTGACTGCTCCGAGCTCGGGCTCTCAGTGGTGCCTGCGGACCTGGACCCCCTGACGGCTTAC
CTAGACCTCAGTATGAACAACCTCACGGAGCTTCAGCCGGGTCTCTTCCACCACCTGCGCTTCCTGGAGG
AGCTGCGGCTCTCAGGGAACCACCTCTCACACATCCCGGGACAGGCATTCTCTGGCCTCCACAGCCTCAA
AATTCTAATGCTGCAGAGCAACCAGCTCCGTGGGATCCCAGCAGAGGCACTATGGGAGCTGCCCAGCCTG
CAGTCGCTGCGCCTAGATGCTAATCTCATCTCCCTGGTCCCTGAGAGAAGCTTTGAGGGGCTCTCCTCCC
TCCGCCACCTCTGGCTGGATGACAATGCACTCACCGAGATCCCCGTCAGAGCTCTCAACAACCTTCCTGC
CCTACAAGCCATGACCTTGGCTCTCAACCATATCCGCCACATCCCTGACTATGCCTTCCAGAACCTCACC
AGTCTTGTGGTGCTGCATCTACATAACAACCGCATCCAGCATGTGGGGACCCACAGCTTCGAGGGGCTGC
ACAATCTGGAGACACTAGACCTGAACTATAATGAGCTGCAGGAGTTCCCCTTGGCTATCCGGACCCTGGG
CAGGCTGCAGGAATTGGGTTTCCATAACAACAACATCAAGGCTATCCCAGAGAAAGCCTTCATGGGCAGC
CCTCTCCTGCAGACAATACATTTTTATGACAACCCAATCCAGTTTGTGGGAAGGTCAGCATTCCAGTACC
TGTCTAAACTGCATACGCTATCTTTGAATGGTGCCACTGATATCCAAGAGTTCCCAGACCTCAAAGGCAC
CACTAGCCTGGAGATCCTGACCCTGACCCGTGCGGGCATCAGACTGCTCCCACCGGGAGTGTGCCAACAG
CTGCCTAGGCTCCGAATCCTGGAGCTGTCTCATAATCAGATCGAGGAGTTACCCAGCCTGCACAGGTGTC
AGAAGCTGGAGGAAATTGGCCTCCGACATAACCGGATCAAGGAAATTGGTGCAGATACCTTCAGCCAGCT
GGGCTCCTTGCAAGCTTTAGACCTGAGTTGGAATGCCATCCGTGCCATCCACCCTGAGGCTTTCTCAACC
CTTCGATCCTTGGTTAAGCTGGACCTGACTGACAACCAGCTGACCACACTGCCCCTGGCTGGGCTGGGAG
GCCTGATGCACCTGAAGCTCAAAGGGAACTTGGCCCTGTCTCAGGCCTTCTCCAAGGACAGTTTCCCAAA
ACTGAGGATCCTGGAGGTGCCCTACGCCTACCAGTGCTGTGCCTACGGCATCTGTGCCAGCTTCTTCAAG
ACCTCTGGGCAGTGGCAGGCCGAGGACTTTCATCCAGAGGAAGAGGAGGCACCAAAGAGGCCCCTGGGTC
TCCTTGCTGGACAAGCTGAGAACCACTATGACCTAGACCTGGATGAGCTCCAGATGGGGACAGAGGACTC
AAAGCCACACCCCAGTGTCCAGTGCAGCCCTGTTCCAGGCCCCTTCAAGCCCTGCGAGCACCTCTTTGAG
AGCTGGGGCATCCGCCTTGCTGTGTGGGCCATCGTGTTACTCTCCGTACTCTGTAACGGGCTGGTGCTGC
TGACAGTCTTTGCCAGCGGACCCAGCCCGCTGTCCCCCGTCAAGCTTGTGGTGGGTGCGATGGCAGGCGC
CAACGCCCTGTCGGGCATTTCCTGTGGTCTCCTGGCCTCGGTGGACGCCTTGACCTATGGTCAGTTCGCT
GAGTATGGAGCCCGCTGGGAGAGCGGTCTGGGCTGCCAGGCTACGGGCTTCCTGGCTGTCCTGGGTTCAG
AGGCGTCGGTGCTGCTGCTCACACTGGCGGCCGTGCAGTGCAGCATCTCCGTGACCTGCGTCCGAGCCTA
CGGGAAGGCGCCGTCGCCTGGCAGCGTCCGCGCAGGCGCACTGGGATGCCTGGCGCTGGCCGGGCTGGCC
GCAGCACTGCCGCTGGCCTCGGTGGGAGAGTATGGCGCCTCCCCACTCTGCCTGCCCTACGCCCCACCCG
AGGGCCGGCCGGCTGCCCTGGGCTTCGCTGTAGCCCTGGTGATGATGAACTCGCTCTGCTTCCTGGTGGT
GGCCGGCGCCTACATCAAGCTCTACTGTGACCTGCCACGGGGTGACTTTGAGGCCGTGTGGGACTGCGCC
ATGGTGCGCCACGTGGCCTGGCTCATCTTTGCAGATGGCCTCCTCTACTGCCCCGTGGCCTTCCTCAGCT
TTGCCTCTATGCTGGGCCTCTTCCCTGTCACCCCCGAGGCTGTCAAGTCAGTCCTTCTGGTGGTGCTGCC
TCTGCCTGCCTGCCTCAACCCACTGCTCTACCTGCTCTTCAACCCTCACTTCCGGGATGACCTTCGGCGG
CTCTGGCCAAGCCCTCGGTCCCCAGGGCCCCTAGCCTACGCTGCAGCCGGTGAGCTGGAGAAGAGCTCCT
GCGACTCCACCCAAGCGCTGGTGGCTTTCTCAGATGTGGATCTTATTCTGGAAGCTTCTGAGGCTGGGCA
GCCTCCTGGGCTAGAGACCTATGGCTTCCCTTCAGTGACCCTCATCTCCCGACATCAGCCGGGGGCTACC
AGGCTGGAGGGAAACCATTTTGTAGAGTCTGATGGAACCAAGTTTGGGAACCCACAACCTCCCATGAAGG
GAGAACTGCTGCTGAAGGCAGAGGGAGCCACTTTGGCAGGCTGTGGCTCTTCCGTGGGTGGAGCCCTCTG
GCCCTCTGGCTCTCTCTTTGCCTCTCACTTGTAA

Translation (967 aa):
MHSPPGLLALWLCAVLCASARAGSDPQPGPGRPACPAPCHCQEDGIMLSADCSELGLSVVPADLDPLTAY
LDLSMNNLTELQPGLFHHLRFLEELRLSGNHLSHIPGQAFSGLHSLKILMLQSNQLRGIPAEALWELPSL
QSLRLDANLISLVPERSFEGLSSLRHLWLDDNALTEIPVRALNNLPALQAMTLALNHIRHIPDYAFQNLT
SLVVLHLHNNRIQHVGTHSFEGLHNLETLDLNYNELQEFPLAIRTLGRLQELGFHNNNIKAIPEKAFMGS
PLLQTIHFYDNPIQFVGRSAFQYLSKLHTLSLNGATDIQEFPDLKGTTSLEILTLTRAGIRLLPPGVCQQ
LPRLRILELSHNQIEELPSLHRCQKLEEIGLRHNRIKEIGADTFSQLGSLQALDLSWNAIRAIHPEAFST
LRSLVKLDLTDNQLTTLPLAGLGGLMHLKLKGNLALSQAFSKDSFPKLRILEVPYAYQCCAYGICASFFK
TSGQWQAEDFHPEEEEAPKRPLGLLAGQAENHYDLDLDELQMGTEDSKPHPSVQCSPVPGPFKPCEHLFE
SWGIRLAVWAIVLLSVLCNGLVLLTVFASGPSPLSPVKLVVGAMAGANALSGISCGLLASVDALTYGQFA
EYGARWESGLGCQATGFLAVLGSEASVLLLTLAAVQCSISVTCVRAYGKAPSPGSVRAGALGCLALAGLA
AALPLASVGEYGASPLCLPYAPPEGRPAALGFAVALVMMNSLCFLVVAGAYIKLYCDLPRGDFEAVWDCA
MVRHVAWLIFADGLLYCPVAFLSFASMLGLFPVTPEAVKSVLLVVLPLPACLNPLLYLLFNPHFRDDLRR
LWPSPRSPGPLAYAAAGELEKSSCDSTQALVAFSDVDLILEASEAGQPPGLETYGFPSVTLISRHQPGAT
RLEGNHFVESDGTKFGNPQPPMKGELLLKAEGATLAGCGSSVGGALWPSGSLFASHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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