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Report for CCDS50682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50682.1 Public Mus musculus 2 Lcmt2 23 108 98 CCDS HistoryNCBI Gene:329504Re-query CCDS DB by CCDS ID:50682.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110674.3 ENSMUSP00000106302.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110674.3Link to Ensembl Protein Viewer:ENSMUSP00000106302.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110674Re-query CCDS DB by Protein ID:ENSMUSP00000106302
Original member Current member NCBI NM_177846.3 NP_808514.2 Accepted alive Link to Nucleotide Sequence:NM_177846.3Link to Protein Sequence:NP_808514.2Re-query CCDS DB by Nucleotide ID:NM_177846Re-query CCDS DB by Protein ID:NP_808514Link to BLAST:NP_808514.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808514.2 686 Q8BYR1-1 686 100% 0 0

Chromosomal Locations for CCDS 50682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121138540 121140600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGGCCCGCGAGGCCGCCAGCGCCGGGCGGGAACGGTCCAGAGCACCAACGACAGCAGCTCCCTCAGCA
AACGATCGCTTGCCGCACACGGATACGTGCGCGACCCCTTTGCGGCGCTGCTGGTCCCGGGACCCGTGCG
GCGCACGCCGCTTATCCACCGCGGCTATTACGTGCGCGCGCGCGCCGTGCGTCACTGCGTGCGCGCCTTC
CTCGAACTCACTAGCGCGCTCCCGTCCCGGACCAGAGCCCAGATCCTGTCCTTGGGCTCAGGCTCCGACT
CGCTTTATTTTCGTCTGAAAGCGGCGGGCCTCCTGGCCCGAGCTGCCGTCTGGGAGGTGGACTTCCCGGA
CGTGTCTCGGCTCAAGGCGGAGAGGATCGAGGAGACCCCGGAGCTGCGTGCGCAGACCGGTCCTTTCAAG
ATCGGGGACTCGGCGTCATCTCTGTGCTTCGAGAGCGCGGACTACCGCATCCTGGGCGCGGACCTGCGGG
AGCTCCAGCGATTAGGAGAGGCCCTGGATGGCGCCGGCCTGGACGCCACCTCTCCCACGCTGCTCCTGGC
CGAGGCGGTGCTGACCTACTTGGAGCCCTCCAGTGCCACAGCCCTCATTGCCTGGGCCGCCCAGCGTTTC
CCCGACGCCCTTTTCGTGATCTATGAGCAGATGCAGCCGGGGGATGCCTTTGGGCAGATCATGCTGCAGC
ACTTTCAGCGGTTGCATTCACCCTTGCATGGCCTGGAGCTGTTTCCCGTCGTGAAGGCCCAGCGCCAGCG
CTTCCTTCAAGCTGGCTGGACTGCCTGCAGCGCCCTGGACCTGAACGAGTTCTATCGCCGCCTTCTCTCG
GCAGAAGAGCGCCAGCGGGTTGAGACGCTTGAACCCTTTGATGAATATGAGGAGTGGCATCTGAAGTGTT
CACATTATTTCATCCTGGCAGCATCTAGGGGAGACATTCTGTCAGAAACTCCAGTGTTTGAGCCCTCAGA
GGCTTCTTTTCAGATAGATCCTGCCTCGCCTTCAGGGTTTCTTTCTGCCAGAGTAGTCACTAGTGACCAC
CAGCACTCAAGCCTGAAGCGATATGGCCACGCCTCTGCCCTCTTGAGCCCTGGCGTTATTTTCAGTGCAG
GAGGCTTTGGAGAACAAGAGGGACGACACTGCCGAGTGAGCAGGTTTCACGTGCTCTCCAGATCCTGTGA
CTCGGAATGGGAAGGCTGCCAAATAAGTACCTTGGGGACTGAAGGCCAGTGGGATGGACGCCTTTATCAC
ACCATGACAAGGCTTTCTGATACTCGGGTTCTGGTTCTTGGAGGAAGACTCTCCCCAGTAAGTCCAGCCT
CTGGGGCTCTCCAACTTGATTTATACAAAAGTAAGGATAATTGCTCTGAGGGCCAAAATGTAACAGTAAC
GAAGGCTGCCTTGGAAGAAGGTTCAGTGTTGTCATGTTGGCGGCATTCAACAACGGAAGTATACTATCAG
AATCAAAGATACTTATTTGTGTATGGTGGCCGAAGTGTGGCTGAACCTGTACTAAGTGACTGTCGTTTTC
TACATGTAGAGACAATGGCTTGGGTCAGAATCCCAGTACAAGGCGCATCACCCGAAGGTCGGCATTCCCA
TAGCGCCTGCAGTTGGCAAGGGGGAGCACTTATCGCTGGAGGTCTTGGGGCTTCTGAGGAACTGTTGAGC
TCTGTACTCTTTCTCAAACCAGTGTCCTCTGGATTCCTCTGGGAATCAATAGATATCCAGCCCTCCATTA
CCCCAAGGTACTCTCACACGGCTCATGTGTTTAATGGAAAGCTGCTTCTGGTTGGAGGGGTCTGGATTCA
TTCCTCCTCAGTTCCTGGAGTGACTGTTATCTGTTTGACTACAGGGTTGAGCTCTGAATATCAGATTGAC
ACAGCGTCTGTGCCATGGCCATTAATGCTGCACAACCACAGCAGCGCCCTCCTTCCTGAAGAGCAGCAGC
TCCTGCTTATTGGAGGTGGAGGGAACTGCTTTTCCTTTGGTACTTATTTCAACCCCCACACAGTGGCATT
AGACCTTTCTTCCTTACGTTCAGGGCAATAA

Translation (686 aa):
MGPRGRQRRAGTVQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARAVRHCVRAF
LELTSALPSRTRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAERIEETPELRAQTGPFK
IGDSASSLCFESADYRILGADLRELQRLGEALDGAGLDATSPTLLLAEAVLTYLEPSSATALIAWAAQRF
PDALFVIYEQMQPGDAFGQIMLQHFQRLHSPLHGLELFPVVKAQRQRFLQAGWTACSALDLNEFYRRLLS
AEERQRVETLEPFDEYEEWHLKCSHYFILAASRGDILSETPVFEPSEASFQIDPASPSGFLSARVVTSDH
QHSSLKRYGHASALLSPGVIFSAGGFGEQEGRHCRVSRFHVLSRSCDSEWEGCQISTLGTEGQWDGRLYH
TMTRLSDTRVLVLGGRLSPVSPASGALQLDLYKSKDNCSEGQNVTVTKAALEEGSVLSCWRHSTTEVYYQ
NQRYLFVYGGRSVAEPVLSDCRFLHVETMAWVRIPVQGASPEGRHSHSACSWQGGALIAGGLGASEELLS
SVLFLKPVSSGFLWESIDIQPSITPRYSHTAHVFNGKLLLVGGVWIHSSSVPGVTVICLTTGLSSEYQID
TASVPWPLMLHNHSSALLPEEQQLLLIGGGGNCFSFGTYFNPHTVALDLSSLRSGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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