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Report for CCDS38321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38321.1 Public Mus musculus 2 Svs3b 23 108 98 CCDS HistoryNCBI Gene:329557Re-query CCDS DB by CCDS ID:38321.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063132.5 ENSMUSP00000062011.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063132.5Link to Ensembl Protein Viewer:ENSMUSP00000062011.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063132Re-query CCDS DB by Protein ID:ENSMUSP00000062011
Original member Current member NCBI NM_173377.2 NP_775553.1 Accepted alive Link to Nucleotide Sequence:NM_173377.2Link to Protein Sequence:NP_775553.1Re-query CCDS DB by Nucleotide ID:NM_173377Re-query CCDS DB by Protein ID:NP_775553Link to BLAST:NP_775553.1

Chromosomal Locations for CCDS 38321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164255602 164256326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164256549 164256621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGAAGTCCATCTTCTTCAGCCTTTCTCTGCTCCTCCTTCTGGAGAAGAAAGCAGCTGGGATAGAACTCT
ATGCAGGTGGAACAAAAGGACACTTCCTAGTAAAAACCTCACCACTCATGTTTATTGGGAAAAGCCAGTT
CCTCTATGGGCACAAAGAAGAACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCAT
GCATATGGCCAGGATGCTGATGCTGACATGGGAGAGGCACTCAGTTCACAGGAACTGACAAGTTTAAAGG
AAGACATAGTTTGTGAAGAAGAAGATGAGCTTGCCCAACAAAAATCCCAGCTGCCATCCCAGTCACAAAT
AAAATCCCAAACCCAAGTAAAATCCTACGCAGCCCAACTGAAGTCCCAACCAGGCCAGCTAAAGACCATA
GGGCAGATGAAGTCACAAACCATGCTGAAATCCCACGGAGCCCCTCTGAAGTCCTACAAAGCACGCCTTA
ATCTGCGAGAAGACATTCCTCAGCAAGTCAAGGGCAGAGGATATGGCCTGGCTGAAGACCTGGCCCAAGT
GCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTC
TACCCACAGTTCAGACGCCGCTCTCGGCCCTACCCTCGGTACTTTGTGCAATTTCAAGAGCAGCTACAGG
GCAGTGTTCATCACACAAAATCTTTCTACCCAGGTCCTGGGATGTGCTACTGTCCAAGAGGAGGGGTGAT
TCTATACCAAGATGCCTTCACTGATTAA

Translation (265 aa):
MKSIFFSLSLLLLLEKKAAGIELYAGGTKGHFLVKTSPLMFIGKSQFLYGHKEEQEEAPEESIFVQTKHH
AYGQDADADMGEALSSQELTSLKEDIVCEEEDELAQQKSQLPSQSQIKSQTQVKSYAAQLKSQPGQLKTI
GQMKSQTMLKSHGAPLKSYKARLNLREDIPQQVKGRGYGLAEDLAQVRQQPAKVHRLKGKHRQSRKTAAF
YPQFRRRSRPYPRYFVQFQEQLQGSVHHTKSFYPGPGMCYCPRGGVILYQDAFTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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