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Report for CCDS38445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38445.1 Public Mus musculus 3 E130311K13Rik 23 108 98 CCDS HistoryNCBI Gene:329659Re-query CCDS DB by CCDS ID:38445.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061706.6 ENSMUSP00000058114.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061706.6Link to Ensembl Protein Viewer:ENSMUSP00000058114.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061706Re-query CCDS DB by Protein ID:ENSMUSP00000058114
Original member NCBI NM_177856.5 NP_808524.1 Updated not alive Link to Nucleotide Sequence:NM_177856.5Link to Protein Sequence:NP_808524.1Re-query CCDS DB by Nucleotide ID:NM_177856Re-query CCDS DB by Protein ID:NP_808524
Current member NCBI NM_177856.6 NP_808524.1 Accepted alive Link to Nucleotide Sequence:NM_177856.6Link to Protein Sequence:NP_808524.1Re-query CCDS DB by Nucleotide ID:NM_177856Re-query CCDS DB by Protein ID:NP_808524Link to BLAST:NP_808524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808524.1 294 Q8BN57 294 100% 0 0

Chromosomal Locations for CCDS 38445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63915337 63915738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63920201 63920361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63925334 63925481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63927264 63927323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63929257 63929370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGCGGCCGCCCGCGAGCCTCGGGTCGCAGGCGCCGGACCGCGACCGAGGGGAGGCCAACGTGGTGA
CACGGGTGTCGCAATGGGCAGACAACCATCTGCGCCTTGTCCAGAACATCAGCACGGGAATGGCCATAGC
TGGGATAATGTTGCTGATAAGGAGCGTCCGGCTGACCTCAAAATTTACAACCTCTTCAGATATTCCAGTA
GAATTTATAAGAAAGAAAGTTAAACTACGTGGCCGATTACAGCGGATAACTGAGTGTGGTCTAGAAATTG
AACATATACCTATTACTTTACCTTTCATATCTTCATGGAAAGAAGAACCACGTGGAGTTTTGCTGGTTAA
ACTGGCTGGAGTAGAACTCACTGAAAGTGGTAAGGTGTGGCTACAGGCAGAGCTGAAGCCTTCCCAGCTG
CTCTGGTTCCAGCTCCTCGGAAAGGAGGACTCAGCACTCTTTTGCTACCTACTAGTGAACAAGGGCGGAT
ATTTTAACGTGAATCTGAATGAGGAGATTTTGAGAAGAGGCTTGGGCAAAACCGTCCTTGTTAAAGGGCT
AAATTATGACTCAAAAACCCACTGGAAAATTCACAGAAACTTACTTAAAGCTGAATTGACGGCCTTAAAG
AAAGGAGAAGGAATATGGAAGGAAGAGTCTGAAAAAGAAAGCTATTTTAGAAAATTGAAAGACTCCTGGA
GAGAGAGATGGACAAAGGACAATGATTTAAAACCAGCTGGAGCAGACCTCGGCTCCACCAAAGACAGTTA
TCACGACAGCCGGCGCAGGGCGTCCGGGAAGGGGAAGGACAGCGTGAGCAACTACTCTTTCTTTCTGAAA
CTCAGAGAATTTGTGAGCCGCTTACACTTTTGGAGGAAAGGATGA

Translation (294 aa):
MARPPASLGSQAPDRDRGEANVVTRVSQWADNHLRLVQNISTGMAIAGIMLLIRSVRLTSKFTTSSDIPV
EFIRKKVKLRGRLQRITECGLEIEHIPITLPFISSWKEEPRGVLLVKLAGVELTESGKVWLQAELKPSQL
LWFQLLGKEDSALFCYLLVNKGGYFNVNLNEEILRRGLGKTVLVKGLNYDSKTHWKIHRNLLKAELTALK
KGEGIWKEESEKESYFRKLKDSWRERWTKDNDLKPAGADLGSTKDSYHDSRRRASGKGKDSVSNYSFFLK
LREFVSRLHFWRKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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