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Report for CCDS38716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38716.1 Public Mus musculus 4 Myorg 23 108 98 CCDS HistoryNCBI Gene:329828Re-query CCDS DB by CCDS ID:38716.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054920.4 ENSMUSP00000059038.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054920.4Link to Ensembl Protein Viewer:ENSMUSP00000059038.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054920Re-query CCDS DB by Protein ID:ENSMUSP00000059038
Original member Current member NCBI NM_001085515.2 NP_001078984.1 Accepted alive Link to Nucleotide Sequence:NM_001085515.2Link to Protein Sequence:NP_001078984.1Re-query CCDS DB by Nucleotide ID:NM_001085515Re-query CCDS DB by Protein ID:NP_001078984Link to BLAST:NP_001078984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078984.1 716 Q69ZQ1 716 100% 0 0

Chromosomal Locations for CCDS 38716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41497478 41499628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGTCCCAGAACCTTCAGGAGACAAGCCAGGCCTACCCCCGACATCGACCTGGTAGCCACGCAGGCCCTA
AAAGTCTCAAAGTTACCCCACGAGCAACCATGTACACTTTCCTGCCTGACAATTTTTCACCTGCCAAACC
CAAGCCCACTAAAGAGCTGAGACCTCTGCTGTGCTCCGCGGTACTGGGACTGCTACTGGTGTTGGCCGCA
GTTGTGGCCTGGTGCTACTACAGTGCCTCCCTACGCAAAGCTGAACGCCTGCGCGCGGAGCTGCTGGACC
TGAACCGTGGCGGCTTCTCCATCCGTAACCAGAAGGGTGAGCAAGTCTTCCGCTTGGCCTTCCGTTCCGG
TGCTCTAGACCTTGACTCCTGCAGCCGGGATGGTGCGCTGCTTGGCTGCTCCCGAGCGGCCGACGGACGC
CCGTTGCACTTCTTTATTCAGACAGTACGACCTAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGG
AAGCTGTGCCAGGGCGTGCTGTGGAGCACGCGATGTTTCTGGGAGATGCTGCGGCGCACTGGTATGGCGG
CGCAGAGATGAGGACGCAACACTGGCCCATCCGCCTAGATGGCCAGCAAGAACCGCAGCCATTTGTCACG
AGCGACGTCTATTCATCTGACGCCGCATTCGGGGGCATCCTTGAGCGCTACTGGTTATCTTCACGCGCCG
CTGCCATCAAAGTCAATGATTCAGTGCCCTTCCACCTGGGCTGGAATAGCACGGAGCGTTCGATGAGACT
GCAGGCACGCTACCACGACACATCTTACAAGCCACCAGCTGGCCGTACTGCCGCGCCAGAGCTCAGCTAC
CGCGTGTGCGTGGGCTCAGATGTCACTTCCATCCACAAGTACATGGTTCGACGTTACTTCAACAAGCCAT
CCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGTCCACGTGGGCACTGCATGGGCGCGCTGT
GGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGCCAGCACCGCTTTAATAGCAGCCACCTGGAA
ATCGATGACATGTACACGCCCGCCTATGGCGACTTTAATTTCGACGAGGGCAAGTTTCCCAACGCCAGTG
ACATGTTCCGCCGCCTGCGAGATGCCGGCTTCCGCGTCACACTTTGGGTGCATCCGTTTGTCAACTATAA
CTCGTCGAGCTTCGGCGAAGGTGTGGAGCGCGAGCTGTTCGTGCGCGAGCCCACGGGCCGGCTGCCCGCG
CTGGTGCGCTGGTGGAACGGTATTGGCGCAGTGCTGGACTTCACGCACCCAGAGGCCCGAGAGTGGTTCC
AGGGACACCTACGGCGCCTGCGCTTGCGCTACAACGTGACCTCCTTTAAGTTCGACGCGGGTGAGGTCAG
CTACCTGCCCAGGGACTTCAGCACCTACAGGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGGTACACC
GAGATGGCGGAGCCCTTCTTCTCGCTAGCCGAGGTCCGCGTGGGGTACCAGTCACAGAACATCTCCTGCT
TCTTCCGTCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTTATCCCTGCGGT
GCTCACCGTCAGTATGCTGGGCTATCCGTTCATCTTGCCCGATATGATAGGTGGCAACGCGGTGCCGGAG
CGCACAGCCGGCCGCCAAGATGGGCCGGGGCCAGAGCGCGAGCTCTACGTGCGCTGGCTGGAGGTGGCCG
CCTTCATGCCTGCCATGCAGTTTTCAATCCCTCCTTGGCAGTACGACGCAGAAGTGGTAGCCATCGCACA
CAAATTCGCTGCTCTGCGCGCCTCCCTCGTGGCGCCACTGCTGCTAGAGCTTGCTGGTGAGATCACCGAC
ACTGGCGACCCCATCGTGCGCCCCCTGTGGTGGATCGCACCGGGGGATGAAACGGCCCATCGCATTGACT
CACAGTTTCTCATCGGGGACACGCTGTTGGTGGCGCCGGTGCTAGAGCCTGGTAAGCAAGAGCGTGATGT
CTACCTGCCTGCCGGCAAATGGCGAAGCTACAAGGGTGAACTTTTTGACAAGACGCCGGTGCTGCTCACG
GATTACCCTGTCGACCTGGATGAGGTCGCCTATTTCACCTGGGCTTCCTGA

Translation (716 aa):
MSQNLQETSQAYPRHRPGSHAGPKSLKVTPRATMYTFLPDNFSPAKPKPTKELRPLLCSAVLGLLLVLAA
VVAWCYYSASLRKAERLRAELLDLNRGGFSIRNQKGEQVFRLAFRSGALDLDSCSRDGALLGCSRAADGR
PLHFFIQTVRPKDTVMCYRVRWEEAVPGRAVEHAMFLGDAAAHWYGGAEMRTQHWPIRLDGQQEPQPFVT
SDVYSSDAAFGGILERYWLSSRAAAIKVNDSVPFHLGWNSTERSMRLQARYHDTSYKPPAGRTAAPELSY
RVCVGSDVTSIHKYMVRRYFNKPSRVPASEAFRDPIWSTWALHGRAVDQNKVLQFAQQIRQHRFNSSHLE
IDDMYTPAYGDFNFDEGKFPNASDMFRRLRDAGFRVTLWVHPFVNYNSSSFGEGVERELFVREPTGRLPA
LVRWWNGIGAVLDFTHPEAREWFQGHLRRLRLRYNVTSFKFDAGEVSYLPRDFSTYRPLSDPSVWSRRYT
EMAEPFFSLAEVRVGYQSQNISCFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMIGGNAVPE
RTAGRQDGPGPERELYVRWLEVAAFMPAMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEITD
TGDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVLLT
DYPVDLDEVAYFTWAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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