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Report for CCDS51218.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51218.2 Public Mus musculus 4 Dennd4c 23 108 98 CCDS HistoryNCBI Gene:329877Re-query CCDS DB by CCDS ID:51218.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 51218.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51218.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142837.2 ENSMUSP00000123367.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142837.2Link to Ensembl Protein Viewer:ENSMUSP00000123367.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000142837Re-query CCDS DB by Protein ID:ENSMUSP00000123367
Original member NCBI NM_184088.1 NP_908976.1 Updated not alive Link to Nucleotide Sequence:NM_184088.1Link to Protein Sequence:NP_908976.1Re-query CCDS DB by Nucleotide ID:NM_184088Re-query CCDS DB by Protein ID:NP_908976
Current member NCBI NM_184088.2 NP_908976.1 Accepted alive Link to Nucleotide Sequence:NM_184088.2Link to Protein Sequence:NP_908976.1Re-query CCDS DB by Nucleotide ID:NM_184088Re-query CCDS DB by Protein ID:NP_908976Link to BLAST:NP_908976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_908976.1 1906 A6H8H2-1 1906 100% 0 0

Chromosomal Locations for CCDS 51218.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 86774255 86774559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86777713 86777965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86779835 86779904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86781542 86781711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86786048 86786286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86788825 86788891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86789904 86789962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86791327 86791471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86795122 86795297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86798044 86798144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86799353 86799571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86802907 86803052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86805370 86805405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86805495 86805625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86807428 86807560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86811413 86811619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86812325 86812453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86813393 86813537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86819862 86819981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86821327 86821470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86824918 86826080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86827968 86828148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86828920 86829029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86829491 86829666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86836380 86836562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86837381 86837576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86839632 86839877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86840985 86841102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86844827 86844977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86847958 86848022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86848770 86848906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5721 nt):
ATGATAGAAGACAAAGGACCTAGAGTGACAGACTACTTCGTTGTGGCAGGTCTCACTGATACATCCACTC
TTTTGGATCAAGAAATAAATCGTACAGATACTAACTCGATTGGTCCTAAAGCTCCAATCACAGACATTGC
TGTTATTATCAAATCAGCTGGGGAAACTGTACCTGAAGGCTACACCTGTGTGGAAGCCACTCCATCAGCA
CTCCAAGCAAACTTGAATTATGGAAGTCTGAAGAGCCCAGAGCTTTTCCTGTGCTACAGGAGAGGGAGAG
ATAAGCCGCCCCTTACAGATATTGGCGTGCTATATGAAGGGAAAGAAAGGCTTATGCCAGGATGTGAAGT
GATCCAAGCCACGCCGTACGGCCGCTGTGCCAATGTCAACAATAGTTCAACTACTTCTCAAAGAATCTTT
ATCACCTATCGAAGGGCTCCCCCAGTGCGGTCCCAGAATTCCTTGGCCGTCACTGATATCTGTGTTATTA
TAACCAGTAAAGGAGAAACCCCTCCGCATACTTTCTGCAAAGTGGATAAAAATTTAAACTGTGGCATGTG
GGGTTCCAACGTGTTTCTGTGTTACAAGAAGTCTGTGCCTGCTTCAAATGCAATAGCATATAAGGCTGGT
TTGATTTTTCGATATCCGGAAGAAGACTATGAGTCTTTTCCGCTCTCACCATCTGTGCCTCTCTTCTGCC
TTCCTATGGGAGCCACTATTGAATGCTGGGATCCTCAAATCAAATACCCACTTCCTGTTTTCTCAACATT
TGTCCTGACAGGGTCTTCAGCTGAAAAGGTATATGGAGCTGCCATCCAGTTTTATGAACCTTACTCTCAA
GAACGTCTAACAGAGAAACAACTTACACAGCTGGGCCTATTGACCCTCGTGGAGAAAAGAGTGGTCTCCA
AACCCATCAATTCAAACAAGTGCATTTGTTTGCTTTCACACTGGCCTTTTTTTGAAGCTTTTAAGAATTT
TCTTATGTTTATCTACAAAGTTTCTGTGTCTGGACCACATCCTCTTCCCATTGAAAAGCACATTTCACAT
TTTATGCAAAATATCCCTTTTCCTTCACCACAAAGACCAAGAATCCTCATCCAGCTATCAGTCCATGATG
CATTTATATTATCACAGCCAGTGTCCACACCTTTACCATTAAGTGGCGCCAACTTTAGCTCCTTGCTGAT
GAATCTGGGTCCTGAGAACTGCGCGACATTGCTGCTGCTGGTTTTGCTCGAGAGTAAGATTCTGCTGCAC
TCTCTGAGGCCAGCGGTACTAACTGGGGTAGCCGAAGCTGTCGTTGCTATGATCTTTCCATTTCAGTGGC
AGTGCCCATATATCCCCCTCTGTCCTCTTTCATTGGCTGGAGTGCTTAGTGCGCCTTTACCATTTATAGT
TGGAGTGGACTCAAGGTACTTTGATCTTCATGACCCACCACAAGATGTTGTCTGCATTGACTTGGATACG
AACACATTATATGTAGCTGATGAAAGAAAGAACATAAACTGGAAGCAGCTTCCCAAAAGGCCGTGCAAGA
GTCTGCTTGGCACCCTGAGGAGGCTGTATCAGCAGCTCTGCTCAGTTCACCGAAAACCTCAAGAAAGTTC
AGCAATTGAGATGACTCCAATTGAAGCAGATTACTCTTGGCAAAAAAAGATGACACAATTGGAGATGGAA
ATTCAGGAGACATTTTTGCGATTTATGGCGTCTATTTTAAAAGGGTACAGGTCATATCTCAGACCAATCA
CAGAAGCTCCTTCTAATAAAGCCACAGCTGCGGATTCATTGTTTGATCGACAGGGTTTTTTGAAAAGTCG
GGATCGTGCCTATACAAAATTCTATACTCTTTTATCCAAAACACAGATTTTTATTCGTTTCATTGAAGAA
TGCAGTTTTGTAAGTGATAAAGATACTGGATTGGCATTTTTTGATGATTGCATCGAGAAGTTGTTTCCAG
ATAAAGGTGTAGAGAGAACAGAAAAGGTTGACTTGGATTCAGCAGAAGACACCAGATTGATAGAGCTAGA
TGATTCACAGAGAAGTGAACACACTGTATTTATAATGCCACCTGAGCCGCCTCCTGATGATGGAAATAAC
TTATCACCTCAGTACAGTTACACATACTTTCCAAGATTGGATCTTAAGCTTTTTGACAGCCCACAGAAGC
TGAAACTGTGCTTCAATAGACATCCTCCTGGGAGTAGCATTACAAACAGCCCTGCCCTCATGGCTAAAAG
GACTAAACAGGAGATAAAAACAGCTCATAAGTTGGCGAAGAGATGTTATACGAATCCACCACAATGGGCC
AAGTATCTATTCAGCCACTGTTACAGTCTGTGGTTTATTTGTCTCCCAGCCTATGTTAGAGTTTCTCACC
CTAAGGTCCGAGCACTCCAGCAGGCACATGATGTGCTTGTTAAGATGCGGAAGACAGACGTGGATCCACT
AGATGAGGTGTGCTATCGAGTAGTCATGCAGCTTTGTGGACTTTGGGTTAATCCTGTTTTAGCAGTGAGA
GTCTTATTCGAGATGAAAACTGCTAGAATAAAACCAAATGCTATCACTTATGGCTATTACAATAAGGTAG
TTTTGGAGAGCCCATGGCCCAGCAGTACTCGCAGTGGTATTTTCTTGTGGACGAAAGTACGGAATGTTGT
ACATGGTTTGGCCCAGTTTAGGCAACCACTTAAAAAGACTGGGCAAAAATCACAGGTCTTTTCAATATCA
GGCGGTCAGTCTGACCAGGGCTACGGGTCTAAGGATGAGCTGGTAAAGGAGGGTGCAGATGGTCACGCCC
CTGAAGAGCACACGCCACCAGAGCTGACGACCACAGAGCTGCACATCGAAGAGGAGTGTGATATATCTGC
CATTGTCTCAAAACACCTGCAGCCTACTCCTGAACCTCAGAGTCCTACGGAGCCTCCTGCATGGGGCAGC
AGTATTGTGAAAGTTCCATCTGGGTTATTTGATACCAACAATAGGACAAGTACTGGTAGTACTTCAACTG
TGCTATTTTCTACTCAAGCTCCAGTCGAGGATGCAGTCTTCAGTGAGGTTACTAATTTCAAGAAGAATGG
TGATAGAGGAGAGAAAAAACAGAAGCATTTCCCTGAGAGGAGCTGTAGCTTTAGTTCTGAAAGTCGAGCG
GGGATGCTGCTTAAGAAGAGCAGTTTGGACCTGAATTCAAGCGAAATGGCCATCATGATGGGAGCAGATG
CCAAGATCCTCACAGCAGCACTGACATGTCCTAAGACTTCCCCGCCTCATGTCACAAGAACTCACAGCTT
TGAGAATGTTAACTGTCATCTAGCTGACAGTAGGACTCGCATGTCAGAAGGCACCCGGGATTCTGAGCAC
AGATCATCTCCTGTGCTAGAGATGCTGGAGGAAAGCCAGGAGCTCCTGGAGCCTGTGGTTGGTGATAATG
TGGCAGAGACTGCGGCAGAGATGACGTGTAACAGTCTACAAAGTAACAGTCACAGTGACCAGTCCAGAGA
CACACAAGCTGGAGCCCAAGATCCAGTGAACAAGAGGAGCAGTTCATATGCTACTAGGAAAGCCATTGAG
AGGGAGGATGTGGAGACGGGACTAGATCCGTTGTCTCTTTTAGCCACTGAATGTGTAGAAAAAACGTCTG
ATTCTGAAGATAAGTTATTTTCTCCAGTAATTTCACGTAATCTGGCTGATGAAATTGAAAGTTACATGAA
CCTAAAAAGCCCACTAGGCAGTAAATCTTGTAGTATGGAATTGCATGGAGAGGGGAACCAGGAGCCTGGC
TCTCCTGCTGTGTTTGCTCACCCTTTAGAAAGGAGCTCGAGTCTGCCTTCAGACCGTGGCCCGCCAGCAC
GAGACAGCACCGAGACTGAGAAGAGCTCCCCTGCTGTGTCCAGCTCTAAAACTCTGACTGGGCGTTTCAA
GCCACAGAGTCCTTACCGCGCTTACAAAGACCGGTCCACTTCCTTATCAGCATTAGTACGTTCTTCACCA
AACAGCTCTCTGGGTTCTGTAGTCAATTCTCTATCGGGGCTAAAGTTGGACAATATACTCTCAGGGCCCA
AGATAGATGTCCTAAAATCTAGTATGAAACAAGCAGCAACGGTGGCCAGTAAGATGTGGGTGGCTGTAGC
ATCTGCCTATAGCTACTCAGATGACGAGGAGGAAACTAATAAAGATTACAGTTTCCCAGCTGGCCTAGAA
GACCATCATATAGTGGGAGAGACTCTGTCGCCTAACACAAGTGTCTCAGGGTTGGTTCCCAGTGAACTGA
CCCAGAGCAACACAAGCCTCGGCAGTAGTAGCAGCAGTGGAGACGTTGGAAAACTGCAGTGTCCAGCAGG
TGAAGTTCCATTTTCAAGAAATATCAAAGGGCAGGACTTTGAAAAGTCAGACCATGGTTCTTCTCAGAAT
ACCAGTATGTCTAGCATCTATCAAAATTGTGCGATGGAGGTTTTGATGTCGAGTTGCTCACAGTGCAGAG
CTTGTGGCGCTCTGGTTTATGATGAGGAAATCATGGCTGGATGGACAGCAGATGACTCAAATTTGAATAC
AACCTGCCCGTTCTGTAAAAGCAACTTCTTGCCTCTTCTCAATGTAGAATTTAAAGACCTGCGAGGCTCT
GCCAGCTTTTTCTTGAAACCAAGCACGTCTGGTGACAGTTTACAAAGCGGCAGCATTCCATCAGCCAGTG
AGCCCTCTGAACACAAACCCACGTCCAGTTCAGCAGAACCTGACCTGATCAGCTTTATGGATTTCTCAAA
ACACAGTGAGACCATAACAGAAGAAGCAAGTTATACAGTCGAATCAAGTGATGAAATAAAGAAAACCAAT
GGTGATGTCCAGAGTGTGAAAATGTCATCTGTGCCTAACAGTTTATCTAAGCGAAACGTATCTTTGACTC
GAAGTCACAGTGTTGGAGGCCCTCTGCAGAATATCGACTTCTCCCAGCGACCATTTCATGGCGTCTCAAC
AGTCAGTCTTCCAAGCAGTCTGCAGGAAGATGTGGACCATCTAGGCAAGCGACCCAGTCCTCCTCCTGTG
TCTGTGCCCTATTTGAGTCCTCTAGTGCTTCGGAAGGAACTTGAATCTTTGCTAGAAAATGAAGGTGATC
AGGTCATCCATACATCCTCATTCATCAATCAACACCCAATCATTTTCTGGAACCTGGTTTGGTATTTCAG
ACGTTTGGACCTTCCTAGCAACTTGCCAGGCCTTATTCTCACCTCTGAGCATTGTAATGGAGGTGTGCAG
CTTCCTCTATCATCTTTGTCCCAGGACAGCAAACTGGTGTATATTCAACTGCTGTGGGATAATATCAACC
TTCATCAGGAACCAGGAGAACCTCTGTATGTCTCTTGGAGGAACTTGAATTCTGAGAAGAAGCCGTCACT
TCTGTCAGAGCAGCAGCAGGCAGCCAGCGCTTTAGTGGAGACGATCAGGCAGAGCATCCAGCAGAATGAC
GTTCTCAAGCCCATCAACCTGCTTTCCCAGCAAATGAAGCCAGGCACGAAACGGCAGAGGAGTTTATACA
GAGAAATCCTTTTCTTATCATTAGTGTCTCTTGGGAGAGAAAACATTGATATTGAGGCTTTTGACAATGA
ATATGGACTCGCATACAGAAGTCTGCCTTCAGAGAGTCTTGAAAGGTTACAGAGAATCGATGCCCCACCC
AGTATCAGTGTGGAGTGGTGCAGGAAGTGTTTTGGAGCGCCTCTCATTTAA

Translation (1906 aa):
MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRTDTNSIGPKAPITDIAVIIKSAGETVPEGYTCVEATPSA
LQANLNYGSLKSPELFLCYRRGRDKPPLTDIGVLYEGKERLMPGCEVIQATPYGRCANVNNSSTTSQRIF
ITYRRAPPVRSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAG
LIFRYPEEDYESFPLSPSVPLFCLPMGATIECWDPQIKYPLPVFSTFVLTGSSAEKVYGAAIQFYEPYSQ
ERLTEKQLTQLGLLTLVEKRVVSKPINSNKCICLLSHWPFFEAFKNFLMFIYKVSVSGPHPLPIEKHISH
FMQNIPFPSPQRPRILIQLSVHDAFILSQPVSTPLPLSGANFSSLLMNLGPENCATLLLLVLLESKILLH
SLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDT
NTLYVADERKNINWKQLPKRPCKSLLGTLRRLYQQLCSVHRKPQESSAIEMTPIEADYSWQKKMTQLEME
IQETFLRFMASILKGYRSYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYTKFYTLLSKTQIFIRFIEE
CSFVSDKDTGLAFFDDCIEKLFPDKGVERTEKVDLDSAEDTRLIELDDSQRSEHTVFIMPPEPPPDDGNN
LSPQYSYTYFPRLDLKLFDSPQKLKLCFNRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYTNPPQWA
KYLFSHCYSLWFICLPAYVRVSHPKVRALQQAHDVLVKMRKTDVDPLDEVCYRVVMQLCGLWVNPVLAVR
VLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKSQVFSIS
GGQSDQGYGSKDELVKEGADGHAPEEHTPPELTTTELHIEEECDISAIVSKHLQPTPEPQSPTEPPAWGS
SIVKVPSGLFDTNNRTSTGSTSTVLFSTQAPVEDAVFSEVTNFKKNGDRGEKKQKHFPERSCSFSSESRA
GMLLKKSSLDLNSSEMAIMMGADAKILTAALTCPKTSPPHVTRTHSFENVNCHLADSRTRMSEGTRDSEH
RSSPVLEMLEESQELLEPVVGDNVAETAAEMTCNSLQSNSHSDQSRDTQAGAQDPVNKRSSSYATRKAIE
REDVETGLDPLSLLATECVEKTSDSEDKLFSPVISRNLADEIESYMNLKSPLGSKSCSMELHGEGNQEPG
SPAVFAHPLERSSSLPSDRGPPARDSTETEKSSPAVSSSKTLTGRFKPQSPYRAYKDRSTSLSALVRSSP
NSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLE
DHHIVGETLSPNTSVSGLVPSELTQSNTSLGSSSSSGDVGKLQCPAGEVPFSRNIKGQDFEKSDHGSSQN
TSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGS
ASFFLKPSTSGDSLQSGSIPSASEPSEHKPTSSSAEPDLISFMDFSKHSETITEEASYTVESSDEIKKTN
GDVQSVKMSSVPNSLSKRNVSLTRSHSVGGPLQNIDFSQRPFHGVSTVSLPSSLQEDVDHLGKRPSPPPV
SVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNGGVQ
LPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKPSLLSEQQQAASALVETIRQSIQQND
VLKPINLLSQQMKPGTKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLPSESLERLQRIDAPP
SISVEWCRKCFGAPLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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