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Report for CCDS51349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51349.1 Public Mus musculus 4 Fhad1 23 108 98 CCDS HistoryNCBI Gene:329977Re-query CCDS DB by CCDS ID:51349.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105779.8 ENSMUSP00000101405.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105779.8Link to Ensembl Protein Viewer:ENSMUSP00000101405.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105779Re-query CCDS DB by Protein ID:ENSMUSP00000101405
Original member Current member EBI ENSMUST00000105780.7 ENSMUSP00000101406.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105780.7Link to Ensembl Protein Viewer:ENSMUSP00000101406.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105780Re-query CCDS DB by Protein ID:ENSMUSP00000101406
Original member Current member NCBI NM_177868.4 NP_808536.2 Accepted alive Link to Nucleotide Sequence:NM_177868.4Link to Protein Sequence:NP_808536.2Re-query CCDS DB by Nucleotide ID:NM_177868Re-query CCDS DB by Protein ID:NP_808536Link to BLAST:NP_808536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808536.2 1420 A6PWD2-1 1420 100% 0 0

Chromosomal Locations for CCDS 51349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141890851 141890961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141896428 141896481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141899185 141899250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141903849 141904014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141904961 141905181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141905547 141905642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141908979 141909106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141909733 141909862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141915933 141916059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141916393 141916552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141918274 141918380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141918748 141918832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141920737 141920962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141922244 141922417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141928380 141928484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141929530 141929637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141932793 141932900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141939021 141939158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141940057 141940127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141951482 141951677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141954042 141954191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141955293 141955376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141957575 141957682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141963413 141963517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141964585 141964674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141972789 141972919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141974280 141974403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141982148 141982390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141985476 141985585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141991100 141991340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 142002391 142002597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 142011545 142011637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4263 nt):
ATGAAAGCGTATTTGAAGAGCGCTGATGGCTTTTTTGTCCTGAATAAAAGCACCACAATCGGCAAGCATG
CAGATTCAGACCTCGTCTTACAGTCCGCAGATATCGACAACCACCATGCCCTCATTGAATTCAACGAGGC
CGAGGGCACCTTCGTCCTTCAGGACTTTAACTCCCGCAACGGCACGTTTGTCAACGAGTGCCACATTCAG
AATGTGGCGGTGAAGCTGATCCCTGGGGACATTCTGCGGTTCGGGTCTGCAGGGATGACCTACGAGCTGG
TCATTGAGAACCCGTCCCCGGTCTCCTGCCCATGGGTGAGGGGCCCAGCACCTTGGCCAAGTCCACAGCC
ACACCTGTCGTCCTCGCCACCCGACATGCCCTTCCACCACGGTATCCAGCCAGCAACAGTGCAGAGAAGT
TGGTCACAGGGTTGTCCCAGACCCACCATGGTCCCACCTGCCCCTCACCAGCGGCCCATGAGTGCCAGCG
GGAAGATGTTTTCCTTTGTGATGGACCCAAAGTCCCCTGTCATCAACCAAGTGTGGGCCAACGCTATGGA
CATGTCAGAGCAATGCATGATGGATGGACTCTCCGGGACGATACCTCCCACCGAGATCTTCATGGACCAC
GACCTAAGCCAGCAAGACAAGGACGAGATCATTCTGCTCTTGGGGAGAGAGGTTAATCGGCTCTCTGACT
TTGAAATGGAGTCCAAATATAAAGACGCTCTGATCATGAACCTGCAGGCTGAGGTGGCCGACCTGAGCCA
AAGGTTGTCAGAGACAGCCGCTGTCGCCGCAGCCAGGCAGAGTAACAGGTGTGACCCGAAGCTCCAGGGC
GTGGATGAAGGCGACGATCTCAGGCAGAAGGAGATTGAGAGCATGAAAAGCCAGATCAACGCTCTTCAAA
AAGGCTATAGCCAGGTGCTGAGTCAGACCCTGGCAGAGCGCAACACGGAAATCGAATCCCTGAAGAATGA
GGGCGAGAACTTAAAGAGAGACCATGCCATTACATCAGGGATGGTGACATCTTTACAGAAAGACATGTCA
GCACGCAACGAGCAAGTTCAACAGCTGCAGGAGGAGGTAAATCGACTGAGGATCGAGAACAGGGAGAAGG
AGTACCAGCTGGAAGCCCTGAGCTCCAGGTGTTCAGTGATGAAAGAAGAGCTAAGAAAGGAAGAGGCTCA
GAAGGATCGCAGGGAGGCCCAGGAGAAAGAGCTGAAGCTATGCAGAAGTCAAATGCAAGACATGGAGAAA
GAAGTGAGGAAGCTCAGAGAGGAACTAAAGAAGAACTATATGGGTCAGAACATCATCTCCAAGACGCTAC
GAGAAAAGAACAAGGTCGAAGAGAAGCTTCAGGAAGATTCCAGAAGGAAATTGCTTCAGCTGCAAGAAAT
GGGGAACAGAGAGAACCTCATTAAAATCAATTTGGAAAGGGCAGTAGGCCAGCTAGAGAACTTCAGAAAC
CAGGTCATCAAAGCCACTTTCGGAAAAACAAAGCCATTCCGCGACAAGCCCATCACGGACCAGCAGCTGA
TAGAGAAGATCATCCAGGTCACCGAGGACAACCTCAGCTTCCAGCAGAGGAAGTGGACCCTGCAAAGGGA
GACCCATCTGCACCCCAAGCAAGAGGAGACCATGCACAGCGTGGAGAAGCTGAGGGTGCTGCTGGACAAG
TGCCAGGCTTGCATGAGGGATTCCTGCAGCAGCATCGACCTGAAGAAGGAGGTGGAGCTCCTTCAGCACC
TGCCGCTCAGCCCGCTCGTGTCAGGACTTCAGAAGACGGTAGTGAACATCCTGAGGGTGTCCCTGTCCTG
GCTGGAGGAAACAGAGCAGCTGCTCGGGGACCTCGACATCGAGCTCTCGGATTCTGACAAAGGGTTCTCT
CTGTGTCTGATATATCTTCTGGAACATTACAAGAAAATTATGAGCCAGTCCCAGGATCTTCAGGCCCAGA
TGAACGCCTCTCGGGAAACACAGAAGTCTCTGCGGCAGGAGCACCTGGCTGAGAAAGAGAAGCTGGCAGA
GAAGCTGGAGCAAGAAGAGAAGCTGAAAGCCAAAATCCAGCAGCTGACAGAAGAGAAGGCAGCTCTGGAA
GAGAGCATCGGTCAGGAGAAAAGCAGATCGGAGGAGGCCCTGGAGAAGGCGCAAGCCCGAGTCCGTGAGC
TGGAGAACCACTTGGCTAGTCAAAAGGAGGCCTTGGAGAACAGTGTGGCTCAAGAGAAAAGAAAAATGCG
GGAAATGCTGGAGGCAGAAAGGAGGAAGGCACAAGACCTGGAGAATCAGCTGACCCAGCAGAAGGAGATC
TCAGAGAACAACACGTATGAGAAACTCAAGATGAGAGACACTCTAGAGAAGGAGAAGAGGAAAATACAGG
ACCTGGAGAATCGCCTGACTAAGCAAAAAGAGGAGATAGAATTAAAGGAGCAGAAAGAAAACGTCTTAAA
TAATAAATTAAAAGACGCCCTGGTCATGGTAGAGGACGCTCAGCAGATGAAGACAACGGAGAGTCAAAGA
GCCGAGACGCTCGCTCTGAAGTTAAAGGAAACATTAGCAGAGCTAGAAACAACCAAGACGAAAATGATCC
TGACGGACGATCGGCTGAAGCTGCAGCAGCAGTCGATGAAGGCCCTGCAGGATGAGCGGGAATCCCAGAA
GCACGGCTTCGAGGAGGAAATCTCAGAGTACAAAGAGCAGATCAAACAGCACTCGCAGACCATCGTGAGC
CTAGAGGAAAGGCTCTGCCAAGTGACTCAGTACTACCAGAAGATAGAAGGGGAGATCACAACGTTGAAAA
ACAACGATACAGGACCGAAGGAGGAAGCCTCCCAAGACCTTACAGCAGGACCCCCCCTGGACAGTGGTGA
CAAAGAAATAGCGTGCGACCATCTGATAGATGACTTACTAATGGCTCAGAAGGAAATCCTATCCCAGCAG
GAGATAATCATGAAGCTGAGGACTGACCTCGGGGAAGCTCACAGCCGGATGTCAGACCTGAGAGGGGAAC
TAAGCGAGAAGCAGAAGATGGAGCTGGAGCGGCAGGTGGCCCTGGTGCGACAGCAGAGCGGGGAGCTGAG
CATGCTGAAGGCGAAGGTGGCGCAGACGACTGGCCTGATGGAGAAGAAGGACAGGGAACTGAAGGTCCTC
AGGGAGGCGCTCAGGGCTTCCCAAGAGAAACCCAGACCCCACCTGAGCACGGAGCAGAAGCCTAGGACTC
TGAGCCAGAAGTGTGACATCTCATTGCAGATAGAACCAGCCCACCCAGACTCATTCTCCAGCTTCCAAGA
GGAGCAGTCCTTCAGTGACCTGGGGGTCAAGTGCAAAGGGTCTCGACACGAGGAAACCATCCAGCGGCAG
AGAAAGGCCTTGTCGGAACTCCGAACGCGAGTCAGAGAACTGGAGAAGGCCAACTCCTGCAATCATAAGG
ACCACGTGAATGAATCGTTCCTAGAGCTCAGGACCCTCCGGATGGAAAAAAATGTACAGAAAATATTATT
AGACGCAAAGCCCGACTTGACAACTCTCGCAAGAGTAGAGATCCGACCGCCTCAGAACAGCCCTTTCAAC
TCGGGCTCCACCTTGGTCATGGAGAAGTCCGTGAAGACAGACGCTGGGGAAGCCTTAGAACTCAGTGAGA
AGCTGTACACGGACATGATCAAGACGCTCGGCAGCCTGATGAACATCAAGGACATGTCCAGCCACACGTC
CCTGAAGCACCTCTCACCCAAAGAGCGGGAGAAGGTCAACCACCTCCGACAGAAGGACCTGGACCTGGTG
TTTGATAAGATCACTCAGCTCAAGACCCGGCTTCAGAGGAAAGAGGAGCTCCTGAAGGGATACGAGCAGG
AACTGGAACAGCTCAGGCATAGCAAAGTGTCCGTTCAGATGTACCAGACGCAGGTAGCCAAACTGGAGGA
TGACGTTCACAAAGAGGCAGAGGAAAAGGCGCTGCTGAAGGAAGCCCTGGAGCGCACAGAGCAGCAGCTG
AGCCAGGAAAGGAGATTCAACAGGGTCTTCAAGCAGCAGAAGGATCGAGGAGAGGATCCGGAGCAGAGAA
ACATGTCCTACAGCCCCTTCAAAGACAATGAGAAGCAGAGACGCTTGTTTGTTGAGATGGTCAAGAGCAA
GATGCAGAACTCAAGTGTCCAGGCTGGAGCCAAGAAAGCCACCCTGAAGACAGGCCAAGAGAGAGAGACA
AAGAAGGAGGCATACAAGTCGACCCAGAGCCTTTCATTTGTTAAACCCGGAGGAAAGAACTAG

Translation (1420 aa):
MKAYLKSADGFFVLNKSTTIGKHADSDLVLQSADIDNHHALIEFNEAEGTFVLQDFNSRNGTFVNECHIQ
NVAVKLIPGDILRFGSAGMTYELVIENPSPVSCPWVRGPAPWPSPQPHLSSSPPDMPFHHGIQPATVQRS
WSQGCPRPTMVPPAPHQRPMSASGKMFSFVMDPKSPVINQVWANAMDMSEQCMMDGLSGTIPPTEIFMDH
DLSQQDKDEIILLLGREVNRLSDFEMESKYKDALIMNLQAEVADLSQRLSETAAVAAARQSNRCDPKLQG
VDEGDDLRQKEIESMKSQINALQKGYSQVLSQTLAERNTEIESLKNEGENLKRDHAITSGMVTSLQKDMS
ARNEQVQQLQEEVNRLRIENREKEYQLEALSSRCSVMKEELRKEEAQKDRREAQEKELKLCRSQMQDMEK
EVRKLREELKKNYMGQNIISKTLREKNKVEEKLQEDSRRKLLQLQEMGNRENLIKINLERAVGQLENFRN
QVIKATFGKTKPFRDKPITDQQLIEKIIQVTEDNLSFQQRKWTLQRETHLHPKQEETMHSVEKLRVLLDK
CQACMRDSCSSIDLKKEVELLQHLPLSPLVSGLQKTVVNILRVSLSWLEETEQLLGDLDIELSDSDKGFS
LCLIYLLEHYKKIMSQSQDLQAQMNASRETQKSLRQEHLAEKEKLAEKLEQEEKLKAKIQQLTEEKAALE
ESIGQEKSRSEEALEKAQARVRELENHLASQKEALENSVAQEKRKMREMLEAERRKAQDLENQLTQQKEI
SENNTYEKLKMRDTLEKEKRKIQDLENRLTKQKEEIELKEQKENVLNNKLKDALVMVEDAQQMKTTESQR
AETLALKLKETLAELETTKTKMILTDDRLKLQQQSMKALQDERESQKHGFEEEISEYKEQIKQHSQTIVS
LEERLCQVTQYYQKIEGEITTLKNNDTGPKEEASQDLTAGPPLDSGDKEIACDHLIDDLLMAQKEILSQQ
EIIMKLRTDLGEAHSRMSDLRGELSEKQKMELERQVALVRQQSGELSMLKAKVAQTTGLMEKKDRELKVL
REALRASQEKPRPHLSTEQKPRTLSQKCDISLQIEPAHPDSFSSFQEEQSFSDLGVKCKGSRHEETIQRQ
RKALSELRTRVRELEKANSCNHKDHVNESFLELRTLRMEKNVQKILLDAKPDLTTLARVEIRPPQNSPFN
SGSTLVMEKSVKTDAGEALELSEKLYTDMIKTLGSLMNIKDMSSHTSLKHLSPKEREKVNHLRQKDLDLV
FDKITQLKTRLQRKEELLKGYEQELEQLRHSKVSVQMYQTQVAKLEDDVHKEAEEKALLKEALERTEQQL
SQERRFNRVFKQQKDRGEDPEQRNMSYSPFKDNEKQRRLFVEMVKSKMQNSSVQAGAKKATLKTGQERET
KKEAYKSTQSLSFVKPGGKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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