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Report for CCDS23653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23653.1 Public Mus musculus 9 Tgm4 23 108 98 CCDS HistoryNCBI Gene:331046Re-query CCDS DB by CCDS ID:23653.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026893.5 ENSMUSP00000026893.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026893.5Link to Ensembl Protein Viewer:ENSMUSP00000026893.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026893Re-query CCDS DB by Protein ID:ENSMUSP00000026893
Original member Current member NCBI NM_177911.4 NP_808579.2 Accepted alive Link to Nucleotide Sequence:NM_177911.4Link to Protein Sequence:NP_808579.2Re-query CCDS DB by Nucleotide ID:NM_177911Re-query CCDS DB by Protein ID:NP_808579Link to BLAST:NP_808579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808579.2 670 Q8BZH1 670 99.7015% 0 2

Chromosomal Locations for CCDS 23653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123034810 123034825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123040374 123040547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123041494 123041591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123044985 123045096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123046484 123046602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123048454 123048555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123051086 123051257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123051329 123051467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123052673 123052776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123056431 123056682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123061626 123061901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123062386 123062555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123064701 123064837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123066732 123066873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGACTCCAGGAATGTGCTTATCATTTACGCTGTGAATGTGGAGAGAAAGCTGAATGCTGCTGCCCACC
ACACATCCGAGTACCAGACCAAGAAGCTCGTGCTGAGGCGTGGACAGATATTCACTCTGAAGGTGATACT
GAACCGACCTCTCCAACCTCAGGATGAGCTGAAGGTGACATTCACTTCCGGACAGAGAGACCCACCCTAC
ATGGTGGAGCTTGATCCAGTGACATCCTACCGTTCTAAGGGCTGGCAGGTGAAGATTGCCAAACAGTCTG
GCGTAGAGGTTATTCTGAATGTCATCAGTGCTGCTGACGCCGTAGTGGGAAGGTACAAGATGAGGGTGAA
CGAGTATAAAGCTGGAGTATTCTACCTTCTCTTCAATCCGTGGTGCTCAGACGACAGTGTCTTCATGGCT
AGTGAGGAAGAACGAGCAGAGTACATCCTTAATGACACCGGCTACATGTACATGGGTTTCGCCAAACAAA
TTAAAGAGAAGCCCTGGACCTTTGGTCAGTTTGAGAAGCACATCCTGAGCTGCTGCTTCAACTTGTTGTT
CCAGTTGGAGAACAATGAGATGCAGAACCCAGTGCTTGTGTCCAGGGCCATCTGTACTATGATGTGTGCT
GCGAACGGCGGAGTGCTGATGGGGAACTGGACAGGAGACTATGCCGATGGCACGGCCCCATATGTGTGGA
CCAGCAGTGTACCCATCCTGCAGCAGCATTATGTCACCAGGATGCCTGTACGCTACGGCCAGTGCTGGGT
TTTCTCTGGAATCCTGACCACAGCACTGAGAGCAGTGGGTATCCCAGCTCGAAGCGTGACTAACTTTGAG
TCAGCCCATGATACAGAAAAGAACCTCACAGTAGACATCTACCTGGATGAATCGGGCAAGACAATTCCAC
ATCTGACCAAAGACTCTGTCTGGAATTTCCACGTGTGGACAGATGCCTGGATGAAAAGGCAGGATCTACC
TCATGGCTATGATGGCTGGCAGGTCCTGGATTCTACACCCCAGGAAATCAGCGATGGAGGCTTCCGCACC
GGGCCTTCACCACTGACTGCTATTCGCCAGGGATTGATCCAGATGAAGTATGACACCACGTTTGTGTTCA
CGGAGGTCAATGGTGACAAGTTTATCTGGTTGGTGAAGCAGAACCAGGAAAGGGAGAAGAATATTCTCAT
CGCCGTGGAGACTGCCAGCATCGGCAAGAAAATCAGCACCAAGATGGTGGGCGAGAACAGGCGTGAAGAT
ATAACCTTGCAGTACAAGTTCCCAGAAGGCAGCCCAGAGGAGAGGAAGGTCATGGCGAAGGCTTCTGGTA
AACCTTCTGATGACAAGCTCAACTCTCGGACTCTGAACAACTCTCTTCAGATATCTGTCCTCCAGAACTC
GTTGGAGTTAGGAGCTCCCATCTATTTGACCATAACTTTGAAAAGAAAAACCGCCACCCCACAGAATGTC
AACATTTCCTGCTCCCTCAACCTGCAGACATACACAGGCAACAAGAAGACAAACCTGGGAGTCATCCAGA
AGACTGTGCAGATCCACGGCCAAGAATCAAGGGTGTTTCTCACCATGGATGCCAGCTACTACATCTATAA
ACTGGGCATGGTTGATGATGAGATGGTCATTGGAGGGTTCATCATTGCAGAAATTGTAGATTCTGGTGAA
AGGGTGGCCACTGATACAACCCTGTGTTTCCTGTACTCTGCCTTCTCTGTAGAGATGCCGAGCACAGGCA
AGGTCAAGCAGCCTCTCGTCATCACCAGCAAATTCACGAACACCCTGCCCATCCCTTTGACTAACATCAA
GTTCTCAGTGGAAAGCCTGGGCCTCGCTAACATGAAATCCTGGGAACAAGAGACAGTGCCACCTGGAAAG
ACCATCACTTTCCAAATGGAATGCACCCCAGTGAAAGCTGGACCCCAGAAATTCATTGTCAAGTTTATTT
CCAGACAAGTGAAAGAGGTTCATGCCGAGAAGGTCGTTCTCATCAGCAAGTAG

Translation (670 aa):
MDSRNVLIIYAVNVERKLNAAAHHTSEYQTKKLVLRRGQIFTLKVILNRPLQPQDELKVTFTSGQRDPPY
MVELDPVTSYRSKGWQVKIAKQSGVEVILNVISAADAVVGRYKMRVNEYKAGVFYLLFNPWCSDDSVFMA
SEEERAEYILNDTGYMYMGFAKQIKEKPWTFGQFEKHILSCCFNLLFQLENNEMQNPVLVSRAICTMMCA
ANGGVLMGNWTGDYADGTAPYVWTSSVPILQQHYVTRMPVRYGQCWVFSGILTTALRAVGIPARSVTNFE
SAHDTEKNLTVDIYLDESGKTIPHLTKDSVWNFHVWTDAWMKRQDLPHGYDGWQVLDSTPQEISDGGFRT
GPSPLTAIRQGLIQMKYDTTFVFTEVNGDKFIWLVKQNQEREKNILIAVETASIGKKISTKMVGENRRED
ITLQYKFPEGSPEERKVMAKASGKPSDDKLNSRTLNNSLQISVLQNSLELGAPIYLTITLKRKTATPQNV
NISCSLNLQTYTGNKKTNLGVIQKTVQIHGQESRVFLTMDASYYIYKLGMVDDEMVIGGFIIAEIVDSGE
RVATDTTLCFLYSAFSVEMPSTGKVKQPLVITSKFTNTLPIPLTNIKFSVESLGLANMKSWEQETVPPGK
TITFQMECTPVKAGPQKFIVKFISRQVKEVHAEKVVLISK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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