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Report for CCDS28780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28780.1 Public Mus musculus 17 Or2j3 23 108 98 CCDS HistoryNCBI Gene:258481Re-query CCDS DB by CCDS ID:28780.1Re-query CCDS DB by GeneID:258481See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057394.7 ENSMUSP00000051537.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057394.7Link to Ensembl Protein Viewer:ENSMUSP00000051537.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057394Re-query CCDS DB by Protein ID:ENSMUSP00000051537
Original member Current member EBI ENSMUST00000213505.1 ENSMUSP00000150173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213505.1Link to Ensembl Protein Viewer:ENSMUSP00000150173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213505Re-query CCDS DB by Protein ID:ENSMUSP00000150173
Original member Current member NCBI NM_146488.1 NP_666699.1 Accepted alive Link to Nucleotide Sequence:NM_146488.1Link to Protein Sequence:NP_666699.1Re-query CCDS DB by Nucleotide ID:NM_146488Re-query CCDS DB by Protein ID:NP_666699Link to BLAST:NP_666699.1

Chromosomal Locations for CCDS 28780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38304521 38305459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGTGGAAAATTTCAATGCAAGTTGGGAAGGGTACTTTATTTTTCTGGGTTTTTCTAAATGGCCTCATC
TGGAAGTTGTTCTCTTTGTGGTGATATTGATATTCTACATGATGACACTGATGGGCAATCTCTTCATCAT
AATTTTGTCACACCTAGATTCCCACCTGCATACCCCTATGTACTTCTTCCTCTCAAATCTCTCTGCTTTG
GATCTCTGTTATACCACTAGCTCTGTCCCCCAGCTGCTATTTAACCTCTGGGGCCCAAAGAAAACAATAT
CTTATGCTGGTTGCATGCTTCAGCTCTATTTTGTCCTTGCTCTGGGTACCACAGAGTGTGTTCTGTTGGT
GGTGATGTCCTATGACCGCTATGTAGCTGTGTGTAAACCCTTGCATTACTCTGTACTTATGAATCCTCGT
TTTTGCCAACTGCTGGCTGCAGCATCCTGGGTATGTGGCTTTACCACTTCAGCCCTTCACTCTTCCTTTA
CCTTCTGGGTACCCCTGTGTGGCCATCGCAAAGTAGACCACTTCTTCTGTGAAGTGCCTGCACTGTTGCA
GTTGTCCTGTGTTGATATCCATGCAAATGAGATGACTCTCATGGTCATGAGTGCTATTTTTGTTGTCATA
CCACTTATTCTCATCCTGAGCTCCTATGCTGCCATTGCATGGACTGTCCTGGAAATGCAATCAACCACTC
GACTTCAGAAAGTTTTCGGGACCTGTGGAGCCCATCTTACTGTTGTTTCTCTCTTTTTCATTCCAATCAT
GTGCATTTATCTTCAGCCTTCAACAAAAAGTTCTCAAGATCATGCCAAGTTCATTGCTCTCTTCTACACC
GTTGTCACACCTAGCCTCAACCCTCTCATTTATACTCTAAGAAACAAAGATGTGAGAGGGGCAATAAGGA
GGCTGAGTAGGTATGAGAGGGAGAAATGA

Translation (312 aa):
MVENFNASWEGYFIFLGFSKWPHLEVVLFVVILIFYMMTLMGNLFIIILSHLDSHLHTPMYFFLSNLSAL
DLCYTTSSVPQLLFNLWGPKKTISYAGCMLQLYFVLALGTTECVLLVVMSYDRYVAVCKPLHYSVLMNPR
FCQLLAAASWVCGFTTSALHSSFTFWVPLCGHRKVDHFFCEVPALLQLSCVDIHANEMTLMVMSAIFVVI
PLILILSSYAAIAWTVLEMQSTTRLQKVFGTCGAHLTVVSLFFIPIMCIYLQPSTKSSQDHAKFIALFYT
VVTPSLNPLIYTLRNKDVRGAIRRLSRYEREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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