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Report for CCDS78650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78650.1 Public Mus musculus 1 Or9s14 23 108 98 CCDS HistoryNCBI Gene:258484Re-query CCDS DB by CCDS ID:78650.1Re-query CCDS DB by GeneID:258484See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216553.1 ENSMUSP00000149607.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216553.1Link to Ensembl Protein Viewer:ENSMUSP00000149607.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216553Re-query CCDS DB by Protein ID:ENSMUSP00000149607
Original member Current member EBI ENSMUST00000217316.1 ENSMUSP00000149621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217316.1Link to Ensembl Protein Viewer:ENSMUSP00000149621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217316Re-query CCDS DB by Protein ID:ENSMUSP00000149621
Original member Current member NCBI NM_146491.1 NP_666702.1 Accepted alive Link to Nucleotide Sequence:NM_146491.1Link to Protein Sequence:NP_666702.1Re-query CCDS DB by Nucleotide ID:NM_146491Re-query CCDS DB by Protein ID:NP_666702Link to BLAST:NP_666702.1

Chromosomal Locations for CCDS 78650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92607839 92608807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGCCACATCAGTCCACAGGAATGGAAGTCTCACTCCAGTGTCCTTGCAGGGGTTCGTGCTGGTGGGAT
TTGGGGGAAGTGCAGAGACCCAGGCCCTGCTCTTTGCTGTCTTCCTTGTCCTGTACGTGGTGACCATCCT
GGGCAACCTCACCATGATCATGGTCATCACCCTGGATGCCCGCCTGCACTCCCCCATGTACTTCTTCCTC
AAGAACCTGTCCTTTGTTGACCTCTGCCTCTCTTCTGTCATTATCCCTAATGCCCTGGCCAACATCTTCT
CTTCTTCTAAGACCATCAGCTTTGCAGGATGTGCCACTCAGTTCTTCTTTTTCTCCTTGTTGGCTGCCAC
CGAGGCTGTGCTCTTAGCTGTGATGGCCTATGACCGCTTCATGGCCATCTGCAGTCCCCTGAGGTACCCT
GTGACCATGTGCCCTATGACCTGTGCCCGTCTTGTCCTGGGTACCTTCTGTGTGGCGTGCCTAAACTCCA
TTGTGCAAACCAGCCTCACGTTCCAGCTGCCCTTCTGCAGCTCCAACTACATTGACTACTTCTTTTGTGA
CGTGCCCCCATTGCTTCAGCTGGCCTGTGCCAGCACAGCTATCAATGAGCTTGTCATGTTTGGCATTTGT
GGCTTCATCATTGTGTGTGCTGTGTTTGTGGTCATCATCTCTTATGGTTACATCACTGTCACCATCCTCA
GAATGCGTTCAGGGTCAGGGCGACACAAGGTCTTCTCCACCTGTGGCTCTCACATGACAGCTGTGTCCTT
GTTTTATGGAACTGGCTTTGTTATATATGGCCAGCCAGGAGGTGTGGCATCCATGGAGCAAGGCAAGGTG
GTCTCCACAATCTACACCCTGGTCATCCCCATGCTCAACCCCCTCATCTACAGTCTGCGGAACAAGGATG
TGAAGGACGCCCTGAGGAGGCTGGGACAGAGGCACAGTCTGGTGAAGGAGAGTGGCTAG

Translation (322 aa):
MATSVHRNGSLTPVSLQGFVLVGFGGSAETQALLFAVFLVLYVVTILGNLTMIMVITLDARLHSPMYFFL
KNLSFVDLCLSSVIIPNALANIFSSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYP
VTMCPMTCARLVLGTFCVACLNSIVQTSLTFQLPFCSSNYIDYFFCDVPPLLQLACASTAINELVMFGIC
GFIIVCAVFVVIISYGYITVTILRMRSGSGRHKVFSTCGSHMTAVSLFYGTGFVIYGQPGGVASMEQGKV
VSTIYTLVIPMLNPLIYSLRNKDVKDALRRLGQRHSLVKESG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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