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Report for CCDS22856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22856.1 Public Mus musculus 9 Or7g29 23 108 98 CCDS HistoryNCBI Gene:258518Re-query CCDS DB by CCDS ID:22856.1Re-query CCDS DB by GeneID:258518See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079620.1 ENSMUSP00000078568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079620.1Link to Ensembl Protein Viewer:ENSMUSP00000078568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000079620Re-query CCDS DB by Protein ID:ENSMUSP00000078568
Original member Current member EBI ENSMUST00000216839.2 ENSMUSP00000151112.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216839.2Link to Ensembl Protein Viewer:ENSMUSP00000151112.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216839Re-query CCDS DB by Protein ID:ENSMUSP00000151112
Original member Current member NCBI NM_146525.1 NP_666736.1 Accepted alive Link to Nucleotide Sequence:NM_146525.1Link to Protein Sequence:NP_666736.1Re-query CCDS DB by Nucleotide ID:NM_146525Re-query CCDS DB by Protein ID:NP_666736Link to BLAST:NP_666736.1

Chromosomal Locations for CCDS 22856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19374941 19375879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAACCTGGAAACCAAACAGGCACATCCTACTTTATTCTGATGAGACTAAACTATGATCCTACAGTAG
AGCCCCTCATCTTTGGCTTCTTTATGTTTACATATCTGGTTACAATTGTGGGAAATTTGCTCATCATCAT
TGCTGTCAGCTCTGACTCCCATCTACAAACACCAATGTATCTCTTTCTCTCCAAGCTTTCATTTACTGAC
ATCTGCCTAAGTACAACCACTGTCCCAAACATGTTGAAGAACATCCACACACAGGATCATAGCATCAGTT
ACACAGGTTGCCTCACTCAGGCCTGCTTTGTTTTGAGTTTCGCTGTATTAGAAAGCAGTGTCCTTGCTGC
AATGGCCTATGACCGCTATGCAGCTATTTGTCATCCCCTGAATTACACAGTAATTATGAATCCCCAATTC
TGTGGTTTGCTGATTCTATTGTCCTTGATCATTAGCACTGCGAACAGCTTATTACAGTGTCTGATGATAC
TGCGGTTGTCATTTTGCACAAATAATGAACTTCCTCTGTTCTTCTGTGAGCTTGCTCAAGTCATCAAGCT
TGCCTGTTCTGATACTCTCATCAATTATATCCTCATATATCTTGCAACATTTATATTTGGTGGAATTCCA
ATCTCTGGAATCATTTTCTCTTATACTCGAATTGTCTCTTCTATTTTGAAAATCTCTTCCCTGAGAGGAA
GATACAAAGCCTTTTCTACGTGTGGGTCACATTTTGTAGTTGTATCCTTATTCTATGGTGCAGCAGTGGG
AGTATACATCTGTTCTGCAATTACTGTTTCCCCTCAGATAACTACAGTGTCTTATATGATGTACACAGTG
CTCCCTCAAATGTTGAACCCTTTTATCTATAGCCTAAGAAATAGAGACATGAAGAAAGCTTTGGGAAAAC
TTATCACAAAGGTATCTTGCTTTCTGTGA

Translation (312 aa):
MEPGNQTGTSYFILMRLNYDPTVEPLIFGFFMFTYLVTIVGNLLIIIAVSSDSHLQTPMYLFLSKLSFTD
ICLSTTTVPNMLKNIHTQDHSISYTGCLTQACFVLSFAVLESSVLAAMAYDRYAAICHPLNYTVIMNPQF
CGLLILLSLIISTANSLLQCLMILRLSFCTNNELPLFFCELAQVIKLACSDTLINYILIYLATFIFGGIP
ISGIIFSYTRIVSSILKISSLRGRYKAFSTCGSHFVVVSLFYGAAVGVYICSAITVSPQITTVSYMMYTV
LPQMLNPFIYSLRNRDMKKALGKLITKVSCFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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