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Report for CCDS29978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29978.1 Public Mus musculus X Timm17b 23 108 98 CCDS HistoryNCBI Gene:21855Re-query CCDS DB by CCDS ID:29978.1Re-query CCDS DB by GeneID:21855See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033498.9 ENSMUSP00000033498.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033498.9Link to Ensembl Protein Viewer:ENSMUSP00000033498.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033498Re-query CCDS DB by Protein ID:ENSMUSP00000033498
Original member Current member NCBI NM_011591.5 NP_035721.1 Accepted alive Link to Nucleotide Sequence:NM_011591.5Link to Protein Sequence:NP_035721.1Re-query CCDS DB by Nucleotide ID:NM_011591Re-query CCDS DB by Protein ID:NP_035721Link to BLAST:NP_035721.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035721.1 172 Q9Z0V7 172 100% 0 0

Chromosomal Locations for CCDS 29978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7899444 7899469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7900961 7901060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7903673 7903736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7906071 7906199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7906281 7906391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7906488 7906576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGAGGAGTACGCTCGCGAACCTTGCCCATGGCGAATTGTGGATGATTGCGGTGGAGCTTTCACCATGG
GTGTCATTGGTGGTGGAGTCTTCCAGGCTATCAAGGGCTTCCGCAATGCCCCTGTTGGAATTCGACACCG
GTTCAGAGGTAGTGTCAATGCTGTGAGGATCCGGGCACCCCAGATTGGAGGAAGCTTTGCAGTGTGGGGA
GGTCTGTTCTCCACCATCGACTGTGGCCTGGTCCGGCTACGGGGCAAAGAAGACCCCTGGAATTCCATCA
GCAGTGGAGCGTTGACTGGAGCTGTGCTGGCTGCGCGCAGTGGTCCGCTGGCCATGGTGGGCTCTGCGAT
GATGGGAGGCATCCTGTTGGCCCTCATTGAGGGTGTTGGCATCCTTCTCACCCGCTATACTGCCCAGCAG
TTCCGAAATGCACCCCCATTCTTGGAGGACCCCAGCCAGCTAACCCCGAAAGAGGGATCTCCGGCCCCAG
GTTATCCCAACTACCAGCAGTACCACTGA

Translation (172 aa):
MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWG
GLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQQ
FRNAPPFLEDPSQLTPKEGSPAPGYPNYQQYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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