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Report for CCDS18541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18541.1 Public Mus musculus 4 Dph2 23 108 98 CCDS HistoryNCBI Gene:67728Re-query CCDS DB by CCDS ID:18541.1Re-query CCDS DB by GeneID:67728See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030265.3 ENSMUSP00000030265.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030265.3Link to Ensembl Protein Viewer:ENSMUSP00000030265.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030265Re-query CCDS DB by Protein ID:ENSMUSP00000030265
Original member NCBI NM_026344.3 NP_080620.1 Updated not alive Link to Nucleotide Sequence:NM_026344.3Link to Protein Sequence:NP_080620.1Re-query CCDS DB by Nucleotide ID:NM_026344Re-query CCDS DB by Protein ID:NP_080620
Current member NCBI NM_026344.4 NP_080620.1 Accepted alive Link to Nucleotide Sequence:NM_026344.4Link to Protein Sequence:NP_080620.1Re-query CCDS DB by Nucleotide ID:NM_026344Re-query CCDS DB by Protein ID:NP_080620Link to BLAST:NP_080620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080620.1 489 Q9CR25 489 100% 0 0

Chromosomal Locations for CCDS 18541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117889552 117889676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117889755 117889931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117890018 117890701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117890895 117891118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117891315 117891427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117891710 117891856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAGTCTACGTTCAGCAGCCCTGCGGAGGCAGCCCTGCAACGGGAGGCGGGCGTTCCAGGACAGTTCA
CTCCTCCTGAAGACCTGGACCGCGTGTATGAGCTGGAGCGAGTTACGAAATTTGTCTGCGATTTAGGTTG
TCAGCGGGTGACTTTGCAGTTCCCTGACCAGTTACTAGGAGATGCGGGAGCGGTGGCTGCCCGGCTGGAG
GAAGTCACAGGAGCTAAGATGTTCATTTTAGGGGACACAGCTTATGGCAGCTGCTGTGTGGATGTGCTGG
GCGCCGAGCAGGCTGGAGCTCAAGCCCTTGTGCACTTCGGTCCTGCCTGCTTAAGCCCCCCAGCCTCGCA
GCTGCCCATCACCTTTGTCCTTGGTCAGCGACCCGTTGCTTTAGAGCTCTGTGCAAAGGCCTTTGAAGCC
CAGAACCCAGATCCGACAGCCCCGGTGGTACTGCTGAGTGAGCCAGCTTGTGCCCATGCCCTAGAGCCTT
TGGCCATGCTCCTGCTCCCAAAGTACCAAGATCTGCTCATCTCCCGCCCAGCTCTTCCCCTGCCAGTGGG
ATCCCCGAGCTCACAGCCTGAGTCCCTGGAGCGTTTTGGGCGCTGCTTCCCCCTGAATCCAGGGAGACGT
CTGGAAGAATATGGTGCCTTCTATGTAGGGGCTTCTCAAGCAAGCTCGGACTCCAGCCTTGATCCCGACC
TGAGCAGACTGCTCTTGGGTTGGACACCAGGGCGGCCCTTCTTTTCCTGTTGTCCAGATACAGGACAGAC
ACAAGACCAGGGTGCCAAGGCTGGGAGACTAAGAGCACGAAGACTGTATCTCATAGAGAGGGCCAGAGAT
GCCCGTGTGGTTGGGCTGCTGGCAGGCACATTAGGTGTGGCTCGACACCGTGAGGCACTGGCACACTTGC
GGAAACTGACGGAAGCTGCTGGAAAACGTAGCTATGTGTTAGCCGTGGGGAAGCCCACACCCGCCAAGCT
TGCCAACTTCCCTGAGATGGACGTCTTTGTGCTGTTAGCCTGTCCCCTGGGGGCACTAGCCCCCCAGCCT
TCGGGTGGCTTCTTTCGGCCTGTATTGACGCCATGTGAATTGGAGGCTGCCTGCAACCCTGCCTGGCCCC
CGCCAGGCCTGGCTCCCCACCTCACACATTATGCAGAGCTGTTGCCTGGTTCTCCCTTCCATGTGCCACT
CCCTCCACCTGAGTCAGAGTTGTGGGATACCCCAGATGTGTCACTCATTTCTGGGGAGCTCCGACCACCA
CCTCCTTGGAAGTCATCAGATGACACTAGATGTTCGGCCTTAATTCCGAGGCCCCAACTGGAGCTGGCGG
AGAGCAGCCCTGCAGCTTCATTCCTTAGTTCTCGGAACTGGCAGGGGCTGGAGCCACGCTTGGGCCAGAC
ACCAGTGAAAGAAGCCGTCAGAGGAAGACGAGGTATCGCCATCGCCTACGAGGATGAGGGGAGCAGCTGA

Translation (489 aa):
MESTFSSPAEAALQREAGVPGQFTPPEDLDRVYELERVTKFVCDLGCQRVTLQFPDQLLGDAGAVAARLE
EVTGAKMFILGDTAYGSCCVDVLGAEQAGAQALVHFGPACLSPPASQLPITFVLGQRPVALELCAKAFEA
QNPDPTAPVVLLSEPACAHALEPLAMLLLPKYQDLLISRPALPLPVGSPSSQPESLERFGRCFPLNPGRR
LEEYGAFYVGASQASSDSSLDPDLSRLLLGWTPGRPFFSCCPDTGQTQDQGAKAGRLRARRLYLIERARD
ARVVGLLAGTLGVARHREALAHLRKLTEAAGKRSYVLAVGKPTPAKLANFPEMDVFVLLACPLGALAPQP
SGGFFRPVLTPCELEAACNPAWPPPGLAPHLTHYAELLPGSPFHVPLPPPESELWDTPDVSLISGELRPP
PPWKSSDDTRCSALIPRPQLELAESSPAASFLSSRNWQGLEPRLGQTPVKEAVRGRRGIAIAYEDEGSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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