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Report for CCDS20661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20661.1 Public Mus musculus 6 Arhgdib 23 108 98 CCDS HistoryNCBI Gene:11857Re-query CCDS DB by CCDS ID:20661.1Re-query CCDS DB by GeneID:11857See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032344.11 ENSMUSP00000032344.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032344.11Link to Ensembl Protein Viewer:ENSMUSP00000032344.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032344Re-query CCDS DB by Protein ID:ENSMUSP00000032344
Original member Current member EBI ENSMUST00000111891.3 ENSMUSP00000107522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111891.3Link to Ensembl Protein Viewer:ENSMUSP00000107522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111891Re-query CCDS DB by Protein ID:ENSMUSP00000107522
Original member Current member EBI ENSMUST00000111892.7 ENSMUSP00000107523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111892.7Link to Ensembl Protein Viewer:ENSMUSP00000107523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111892Re-query CCDS DB by Protein ID:ENSMUSP00000107523
Original member NCBI NM_001301301.1 NP_001288230.1 Updated not alive Link to Nucleotide Sequence:NM_001301301.1Link to Protein Sequence:NP_001288230.1Re-query CCDS DB by Nucleotide ID:NM_001301301Re-query CCDS DB by Protein ID:NP_001288230
Current member NCBI NM_001301301.2 NP_001288230.1 Accepted alive Link to Nucleotide Sequence:NM_001301301.2Link to Protein Sequence:NP_001288230.1Re-query CCDS DB by Nucleotide ID:NM_001301301Re-query CCDS DB by Protein ID:NP_001288230Link to BLAST:NP_001288230.1
Original member NCBI NM_001301303.1 NP_001288232.1 Updated not alive Link to Nucleotide Sequence:NM_001301303.1Link to Protein Sequence:NP_001288232.1Re-query CCDS DB by Nucleotide ID:NM_001301303Re-query CCDS DB by Protein ID:NP_001288232
Current member NCBI NM_001301303.2 NP_001288232.1 Accepted alive Link to Nucleotide Sequence:NM_001301303.2Link to Protein Sequence:NP_001288232.1Re-query CCDS DB by Nucleotide ID:NM_001301303Re-query CCDS DB by Protein ID:NP_001288232Link to BLAST:NP_001288232.1
Original member NCBI NM_001301305.1 NP_001288234.1 Updated not alive Link to Nucleotide Sequence:NM_001301305.1Link to Protein Sequence:NP_001288234.1Re-query CCDS DB by Nucleotide ID:NM_001301305Re-query CCDS DB by Protein ID:NP_001288234
Current member NCBI NM_001301305.2 NP_001288234.1 Accepted alive Link to Nucleotide Sequence:NM_001301305.2Link to Protein Sequence:NP_001288234.1Re-query CCDS DB by Nucleotide ID:NM_001301305Re-query CCDS DB by Protein ID:NP_001288234Link to BLAST:NP_001288234.1
Original member NCBI NM_007486.5 NP_031512.1 Updated not alive Link to Nucleotide Sequence:NM_007486.5Link to Protein Sequence:NP_031512.1Re-query CCDS DB by Nucleotide ID:NM_007486Re-query CCDS DB by Protein ID:NP_031512
Current member NCBI NM_007486.6 NP_031512.1 Accepted alive Link to Nucleotide Sequence:NM_007486.6Link to Protein Sequence:NP_031512.1Re-query CCDS DB by Nucleotide ID:NM_007486Re-query CCDS DB by Protein ID:NP_031512Link to BLAST:NP_031512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288230.1 200 Q61599 200 100% 0 0
NP_001288232.1 200 Q61599 200 100% 0 0
NP_001288234.1 200 Q61599 200 100% 0 0
NP_031512.1 200 Q61599 200 100% 0 0

Chromosomal Locations for CCDS 20661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136924127 136924326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136926672 136926735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136929612 136929688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136932260 136932343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136933584 136933761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGACGGAGAAGGATGCACAGCCACAGCTGGAAGAGGCGGACGACGACCTGGACAGCAAGCTCAATTATA
AGCCACCCCCTCAGAAGTCCTTGAAGGAGCTGCAGGAGATGGACAAGGATGACGAGAGTCTAACCAAGTA
CAAGAAAACACTGCTGGGAGATGTCCCTGTGGTAGCAGACCCAACAGTTCCCAACGTGACTGTTACCCGG
CTTAGCCTTGTATGTGACAGTGCACCAGGACCCATCACCATGGACCTTACTGGCGATCTCGAGGCCCTCA
AAAAGGATACATTTGTGCTAAAGGAAGGCATTGAATACAGGGTGAAAATTAACTTCAAAGTGAATAAGGA
TATTGTGTCTGGCCTGAAGTATGTTCAACACACATACCGGACTGGCATGAGAGTGGATAAAGCCACATTC
ATGGTTGGCAGCTATGGGCCCCGACCAGAGGAGTACGAATTCCTCACTCCAGTAGAGGAAGCTCCCAAGG
GCATGCTGGCCCGAGGCACTTACCACAACAAGTCCTTCTTCACGGATGACGACAAACAGGACCACCTCAC
CTGGGAATGGAACCTGGCCATTAAGAAGGATTGGACAGAATGA

Translation (200 aa):
MTEKDAQPQLEEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVPNVTVTR
LSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKATF
MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDWTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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