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Report for CCDS12937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12937.1 Public Homo sapiens 19 NLRP8 24 110 108 CCDS HistoryNCBI Gene:126205Re-query CCDS DB by CCDS ID:12937.1Re-query CCDS DB by GeneID:126205See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291971.7 ENSP00000291971.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291971.7Link to Ensembl Protein Viewer:ENSP00000291971.3Re-query CCDS DB by Nucleotide ID:ENST00000291971Re-query CCDS DB by Protein ID:ENSP00000291971
Original member Current member NCBI NM_176811.2 NP_789781.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176811.2Link to Protein Sequence:NP_789781.2Re-query CCDS DB by Nucleotide ID:NM_176811Re-query CCDS DB by Protein ID:NP_789781Link to BLAST:NP_789781.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789781.2 1048 Q86W28-1 1048 100% 0 0

Chromosomal Locations for CCDS 12937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55947903 55948269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55952538 55952612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55954501 55956100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55962067 55962237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55966213 55966380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55970544 55970696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55973652 55973822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55976133 55976303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55979394 55979564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55987814 55987913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGAGTGACGTGAATCCACCCTCTGACACCCCCATTCCCTTTTCATCCTCCTCCACTCACAGTTCTCATA
TTCCGCCCTGGACATTCTCTTGCTACCCCGGCTCCCCATGTGAAAATGGGGTCATGCTGTACATGAGAAA
CGTGAGCCATGAGGAGCTACAACGGTTCAAGCAGCTCTTACTGACTGAGCTCAGTACTGGCACCATGCCC
ATCACCTGGGACCAGGTCGAGACAGCCAGCTGGGCAGAGGTGGTTCATCTCTTGATAGAGCGTTTCCCTG
GACGACGCGCTTGGGATGTGACTTCGAACATCTTTGCCATTATGAACTGTGATAAAATGTGTGTTGTAGT
CCGCAGAGAGATAAATGCCATTCTGCCTACCTTGGAACCAGAGGACTTGAATGTGGGAGAAACACAGGTG
AATCTGGAGGAAGGAGAATCTGGTAAAATACGGCGGTATAAATCGAATGTGATGGAAAAGTTTTTCCCCA
TATGGGACATTACGACTTGGCCTGGAAACCAGAGGGACTTCTTCTACCAAGGTGTACACAGGCACGAGGA
GTACTTACCATGTCTGCTTCTGCCCAAAAGACCCCAGGGTAGACAGCCCAAGACCGTGGCCATACAGGGA
GCTCCTGGGATCGGAAAAACAATCCTGGCCAAAAAGGTGATGTTTGAGTGGGCCAGAAACAAGTTCTACG
CCCACAAGCGCTGGTGTGCTTTCTACTTCCATTGCCAAGAGGTGAACCAGACGACAGACCAGAGCTTCTC
CGAGCTGATTGAGCAAAAGTGGCCTGGATCTCAGGACCTCGTGTCAAAGATTATGTCCAAACCCGACCAA
CTTCTGCTGCTCTTGGATGGCTTTGAGGAGCTCACATCTACCCTCATTGACAGACTGGAGGACCTGAGTG
AAGACTGGAGGCAGAAATTGCCTGGGTCTGTCCTACTGAGCAGTTTGCTGAGCAAAACGATGCTTCCAGA
GGCCACGCTACTGATCATGATAAGATTTACCTCTTGGCAGACATGCAAGCCCTTGCTGAAATGTCCCTCT
CTCGTAACCCTTCCGGGGTTTAATACGATGGAAAAAATCAAGTATTTCCAGATGTATTTTGGACACACAG
AGGAGGGAGACCAAGTCTTGAGTTTCGCCATGGAAAACACCATTCTCTTCTCCATGTGCCGGGTCCCTGT
GGTTTGCTGGATGGTCTGCTCTGGTCTGAAACAGCAAATGGAGAGAGGAAACAATCTCACACAGTCATGT
CCAAATGCCACCTCTGTGTTCGTCCGGTATATTTCTAGCTTGTTTCCCACCAGAGCTGAGAACTTTTCCA
GAAAGATCCACCAAGCACAACTGGAAGGTCTGTGTCACTTGGCCGCAGACAGCATGTGGCACAGGAAATG
GGTGTTAGGTAAAGAAGATCTTGAGGAAGCCAAGCTGGATCAGACGGGAGTCACCGCCTTCCTTGGCATG
AGTATTCTTCGGAGAATTGCAGGTGAGGAAGACCACTATGTCTTTACCCTCGTGACTTTTCAGGAATTTT
TTGCGGCCTTGTTTTATGTTCTCTGTTTCCCACAAAGACTCAAAAATTTTCATGTGTTGAGCCACGTGAA
TATCCAGCGCCTGATAGCGAGTCCCAGAGGAAGCAAAAGCTATCTCTCTCACATGGGACTTTTCTTATTC
GGTTTTCTGAACGAGGCCTGCGCTTCGGCCGTGGAACAGTCATTCCAATGCAAGGTGTCTTTCGGTAATA
AGAGGAAACTGCTGAAAGTCATACCTCTGTTGCATAAATGTGACCCACCTTCTCCGGGCAGTGGGGTCCC
GCAGTTATTCTACTGTCTGCATGAAATCCGGGAGGAAGCCTTTGTAAGCCAAGCCCTAAATGATTATCAT
AAAGTTGTCTTGAGAATTGGCAACAACAAAGAAGTTCAAGTGTCTGCTTTTTGCCTGAAGCGGTGTCAAT
ATTTGCATGAGGTGGAACTGACCGTCACCCTGAACTTCATGAACGTGTGGAAGCTCAGCTCCAGCTCCCA
TCCTGGCTCTGAAGCGCCAGAGAGCAATGGGCTGCATCGTTGGTGGCAAGACTTATGCTCTGTGTTTGCA
ACGAATGATAAGCTGGAAGTCCTGACTATGACCAACAGTGTTTTGGGGCCTCCTTTTTTGAAGGCTCTCG
CGGCCGCACTGAGGCACCCTCAGTGCAAACTGCAAAAGCTACTCCTAAGGCGTGTGAATAGCACCATGTT
GAACCAGGACTTAATCGGTGTTTTGACGGGGAACCAGCATCTGAGATACTTGGAAATACAACATGTGGAA
GTGGAGTCCAAAGCTGTGAAGCTTCTATGCAGGGTGCTGAGATCCCCCCGGTGCCGTCTGCAGTGTCTCA
GGTTGGAAGACTGCTTGGCCACCCCTAGAATTTGGACTGATCTTGGCAATAATCTTCAAGGTAACGGGCA
TCTAAAGACTCTCATACTAAGAAAAAACTCCCTGGAGAACTGTGGGGCGTATTACCTGTCTGTGGCCCAG
CTGGAGAGGCTGTCGATAGAGAACTGCAACCTTACACAGCTTACTTGTGAAAGCCTTGCCTCCTGTCTCA
GGCAGAGTAAGATGCTGACCCACCTGAGCTTGGCAGAAAACGCCTTGAAAGATGAAGGGGCCAAGCATAT
TTGGAATGCCCTGCCACACCTGAGATGTCCTCTGCAGAGGCTGGTACTGAGAAAGTGTGACTTGACCTTT
AATTGCTGTCAGGATATGATCTCTGCGCTCTGTAAAAATAAAACCCTGAAAAGTCTTGACCTAAGTTTTA
ATAGCCTGAAGGATGATGGGGTGATCCTGCTGTGTGAGGCCCTGAAGAACCCTGACTGTACATTACAGAT
CCTGGAGCTGGAAAACTGCCTGTTCACCTCCATCTGCTGCCAGGCCATGGCTTCCATGCTCCGCAAAAAC
CAACATCTGAGACATCTGGACTTGAGCAAGAATGCGATTGGAGTCTATGGTATTCTGACCTTGTGCGAGG
CCTTCTCAAGCCAAAAGAAGAGAGAAGAGGTCATTTTCTGTATTCCTGCCTGGACTCGAATAACTAGCTT
CTCCCCAACTCCTCACCCACCCGACTTCACGGGAAAAAGTGACTGCCTATCCCAGATTAATCCTTAG

Translation (1048 aa):
MSDVNPPSDTPIPFSSSSTHSSHIPPWTFSCYPGSPCENGVMLYMRNVSHEELQRFKQLLLTELSTGTMP
ITWDQVETASWAEVVHLLIERFPGRRAWDVTSNIFAIMNCDKMCVVVRREINAILPTLEPEDLNVGETQV
NLEEGESGKIRRYKSNVMEKFFPIWDITTWPGNQRDFFYQGVHRHEEYLPCLLLPKRPQGRQPKTVAIQG
APGIGKTILAKKVMFEWARNKFYAHKRWCAFYFHCQEVNQTTDQSFSELIEQKWPGSQDLVSKIMSKPDQ
LLLLLDGFEELTSTLIDRLEDLSEDWRQKLPGSVLLSSLLSKTMLPEATLLIMIRFTSWQTCKPLLKCPS
LVTLPGFNTMEKIKYFQMYFGHTEEGDQVLSFAMENTILFSMCRVPVVCWMVCSGLKQQMERGNNLTQSC
PNATSVFVRYISSLFPTRAENFSRKIHQAQLEGLCHLAADSMWHRKWVLGKEDLEEAKLDQTGVTAFLGM
SILRRIAGEEDHYVFTLVTFQEFFAALFYVLCFPQRLKNFHVLSHVNIQRLIASPRGSKSYLSHMGLFLF
GFLNEACASAVEQSFQCKVSFGNKRKLLKVIPLLHKCDPPSPGSGVPQLFYCLHEIREEAFVSQALNDYH
KVVLRIGNNKEVQVSAFCLKRCQYLHEVELTVTLNFMNVWKLSSSSHPGSEAPESNGLHRWWQDLCSVFA
TNDKLEVLTMTNSVLGPPFLKALAAALRHPQCKLQKLLLRRVNSTMLNQDLIGVLTGNQHLRYLEIQHVE
VESKAVKLLCRVLRSPRCRLQCLRLEDCLATPRIWTDLGNNLQGNGHLKTLILRKNSLENCGAYYLSVAQ
LERLSIENCNLTQLTCESLASCLRQSKMLTHLSLAENALKDEGAKHIWNALPHLRCPLQRLVLRKCDLTF
NCCQDMISALCKNKTLKSLDLSFNSLKDDGVILLCEALKNPDCTLQILELENCLFTSICCQAMASMLRKN
QHLRHLDLSKNAIGVYGILTLCEAFSSQKKREEVIFCIPAWTRITSFSPTPHPPDFTGKSDCLSQINP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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