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Report for CCDS41167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41167.1 Public Mus musculus X Ott 23 108 98 CCDS HistoryNCBI Gene:18422Re-query CCDS DB by CCDS ID:41167.1Re-query CCDS DB by GeneID:18422See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177554.1 ENSMUSP00000137360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177554.1Link to Ensembl Protein Viewer:ENSMUSP00000137360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177554Re-query CCDS DB by Protein ID:ENSMUSP00000137360
Original member Current member NCBI NM_011022.1 NP_035152.1 Accepted alive Link to Nucleotide Sequence:NM_011022.1Link to Protein Sequence:NP_035152.1Re-query CCDS DB by Nucleotide ID:NM_011022Re-query CCDS DB by Protein ID:NP_035152Link to BLAST:NP_035152.1

Chromosomal Locations for CCDS 41167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 149098028 149098043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149115086 149115211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149115931 149116010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149119673 149120631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149129820 149129901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149130708 149130757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149137514 149137550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCGAACCATGAAGACGAAATTAGACAGCTGAGATATCTAGAAGCTGCTAATTCTGAAGAAGAATACA
ATGAGGAGAATGACATACAGTCAGAAAGCTCCAGAGGGCAAGCATTTTTCCCTGGACATCCGCGAGGGAG
AGGACACAGACGTGACAGTAGGGGAAGAAATGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCT
CTACTTCATCTGACAAGACAAGTCAACCTAGAAAGTCTAACAAGGAGGAATGGAAACCAATCAGAAGAGA
GACAGCTACAACAAGAAAGAATCCAATTGTTCTTCAGGAGTTTACATGGCCTCTCCCAATCTCATGACCA
CCACATTGGCAGATCTCATGGCCACGATTCCAGAAGATCATGTAATCGATTCAGGAGAGCTCCTGTTCAG
TCAGAGAGATCTCATGTCTACTCAGGTAGAACTAATAACTATACAGATAGACCACACCATGACCTCTCAG
ATAGACCACACAATCAACTCTCAGTGAGACCACATCCTGACCTCTCAGGTAGACCACTTCATGACTACTC
AGGTAGACCACATCAAAACCATGCAGTTAGGCTTCAACATGGCCACTCAGATAGATATCATCTTACCCAT
ACAGAGAGAGTTCTTCCTAACAACTCAGGGATAGCTCATCCTGGCCACACAGAGAGAGATAATCAAGTCC
AAAGAGGGAGAGCTCATGATAACCAATCAGGATTAGCTCATCACAACCATGATGGCAGATCTCATCATGA
CCACTCAGGGAGAGCTTATCACGGCCATGCAAGGAGAGCTCATAACAACCAGTCATGGAGATCTGATAAC
AACCAGTCATGGAGAGATCTTAACCAGTCATGGAGAGGTCAGAACAACCAGTCACAGAGAGGTCATGACA
ACCAGTCACGGAGAGGTCATGACAACCAGTCACGTAGAGGTCATGACAACCAGTCACAGAGAGGTCATGA
CAACCAGTCACAGAGAGGTCATAATGATCAGTCATGGAGAGCTCATAACATCCGGTCACGGAGAGATCGT
TATCACACCTCATTGAGATCTAGTAGCATCCAGTCATGGATGCTTCATGAAAGAGAAAGATACCATGGTC
CAAGAGGAAGAAATGGACCAAGGGATGCATCACCACCAGGATCTGAGCCAGAAATTGACAGATCGTCTGC
AATAAGAGAAAGGACTGACTATTTATGGGTACAGGAACATCGAAGAAATGAGACAGTTGAACTGAATGTA
GCGCTAGAAGACGGCTACAGCAGTGCTGAAGAGAGTGATGAAAGTTTTGACAGACTAACCTGTCGCTCCA
TGCTAGATACACTATACTAA

Translation (449 aa):
MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHP
LLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSCNRFRRAPVQ
SERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTH
TERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDN
NQSWRDLNQSWRGQNNQSQRGHDNQSRRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDR
YHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNV
ALEDGYSSAEESDESFDRLTCRSMLDTLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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