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Report for CCDS20397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20397.1 Public Mus musculus 6 Trnt1 23 108 98 CCDS HistoryNCBI Gene:70047Re-query CCDS DB by CCDS ID:20397.1Re-query CCDS DB by GeneID:70047See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057578.15 ENSMUSP00000060900.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057578.15Link to Ensembl Protein Viewer:ENSMUSP00000060900.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000057578Re-query CCDS DB by Protein ID:ENSMUSP00000060900
Original member Current member EBI ENSMUST00000113248.3 ENSMUSP00000108874.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113248.3Link to Ensembl Protein Viewer:ENSMUSP00000108874.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113248Re-query CCDS DB by Protein ID:ENSMUSP00000108874
Original member Current member EBI ENSMUST00000113249.7 ENSMUSP00000108875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113249.7Link to Ensembl Protein Viewer:ENSMUSP00000108875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113249Re-query CCDS DB by Protein ID:ENSMUSP00000108875
Original member Current member NCBI NM_001242358.1 NP_001229287.1 Accepted alive Link to Nucleotide Sequence:NM_001242358.1Link to Protein Sequence:NP_001229287.1Re-query CCDS DB by Nucleotide ID:NM_001242358Re-query CCDS DB by Protein ID:NP_001229287Link to BLAST:NP_001229287.1
Original member Current member NCBI NM_027296.3 NP_081572.1 Accepted alive Link to Nucleotide Sequence:NM_027296.3Link to Protein Sequence:NP_081572.1Re-query CCDS DB by Nucleotide ID:NM_027296Re-query CCDS DB by Protein ID:NP_081572Link to BLAST:NP_081572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229287.1 434 Q8K1J6-1 434 100% 0 0
NP_081572.1 434 Q8K1J6-1 434 100% 0 0

Chromosomal Locations for CCDS 20397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 106769856 106770003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106773285 106773478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106774406 106774544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106776119 106776245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106777918 106778111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106778788 106779041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106779186 106779434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGCAGAGCGTCCTGTATCCTTGGCACAGGCAGGTCCTGAGGTGTAGTTGGAGTAGATTGTGCCTTCTGA
AGCGATACCTGTTTACAATGAAGTTGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGAAGGATTGAAGAG
CCTGACAGAATTATTTGCCAAAGAGAATCATGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTACTG
AATGGGGTGAAGCCTCAAGATGTGGATTTCGCCACCACTGCCACCCCTACTCAGATGAAGGAGATGTTCC
AGTCAGCTGGCATTCGCATGATCAACAACAAAGGAGAGAAACATGGGACTATCACTGCCAGGCTTCATGA
AGAAAATTTTGAAGTTACTACACTCCGAATTGATGTTACCACTGATGGAAGACATGCAGAGGTAGAATTC
ACAACTGACTGGCAGAAAGACGCTGAACGAAGAGATCTCACTATAAATTCTATGTTTCTAGGTTTTGATG
GTACACTGTTTGATTACTTCAATGGTTATGCAGATTTAAAAAATAAAAAGGTTCGATTTGTTGGACATGC
AAAACAGAGAATTCAGGAAGATTATCTTCGAATTTTAAGGTATTTCAGGTTTTATGGCAGAATTGTCGAC
AGACCTGGTGACCATGACCATGAGACTCTAGAAGCAATTGCAGAAAATGCCAAAGGTTTGGCTGGAATAT
CAGGAGAGAGGATTTGGGTAGAACTGAAGAAAATTCTTACTGGTGACCATGTAAACCATTTGATCCACCT
GATCTATGATCTTGGTGTGGCTCCTCACATAGGTTTACCTGCTAATGCAAATTTAGAAGAATTTAACAAA
GTCAGTAAAAATGTTGAAGGCTTTTCACCAAAACCAATGACTCTTTTGGCTTCTTTATTCAAAGTACAAG
ATGATGTCACAAAATTGGACTTGAGATTGAAAATTTCAAAAGAGGAGAAAAACCTGGGTTTATTTATAGT
TAAAAACAGGAAAGACTTGATTAAAGCAACAGATAGTTCAGAACCATTGAAACCATACCAAGACTTTGTG
ATAGACTCTAGGGAACCAGATGCAACTGCCCGTGTTTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTC
TTCTCAAAGAGATGCAGCAGTGGTCTGTCCCGCCGTTCCCTGTGAGTGGACATGACATCAGGAAAGTGGG
TATTTCTTCAGGGAAGGAAATTGGGGCCCTGCTACAGCAGTTGCGTGAACAGTGGAAGAAAAGTGGTTAC
CGGATGGAAAAAGATGAACTACTAAGTTACATAAAGAAGACCTAA

Translation (434 aa):
MQSVLYPWHRQVLRCSWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLL
NGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEF
TTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVD
RPGDHDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANANLEEFNK
VSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSSEPLKPYQDFV
IDSREPDATARVCELLKYQGEHGLLKEMQQWSVPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
RMEKDELLSYIKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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