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Report for CCDS18595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18595.1 Public Mus musculus 4 Rims3 23 108 98 CCDS HistoryNCBI Gene:242662Re-query CCDS DB by CCDS ID:18595.1Re-query CCDS DB by GeneID:242662See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071093.8 ENSMUSP00000068178.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071093.8Link to Ensembl Protein Viewer:ENSMUSP00000068178.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071093Re-query CCDS DB by Protein ID:ENSMUSP00000068178
Original member Current member EBI ENSMUST00000106283.7 ENSMUSP00000101890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106283.7Link to Ensembl Protein Viewer:ENSMUSP00000101890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106283Re-query CCDS DB by Protein ID:ENSMUSP00000101890
Original member Current member EBI ENSMUST00000171363.1 ENSMUSP00000130295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171363.1Link to Ensembl Protein Viewer:ENSMUSP00000130295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171363Re-query CCDS DB by Protein ID:ENSMUSP00000130295
Original member NCBI NM_182929.3 NP_891559.1 Updated not alive Link to Nucleotide Sequence:NM_182929.3Link to Protein Sequence:NP_891559.1Re-query CCDS DB by Nucleotide ID:NM_182929Re-query CCDS DB by Protein ID:NP_891559
Current member NCBI NM_182929.4 NP_891559.1 Accepted alive Link to Nucleotide Sequence:NM_182929.4Link to Protein Sequence:NP_891559.1Re-query CCDS DB by Nucleotide ID:NM_182929Re-query CCDS DB by Protein ID:NP_891559Link to BLAST:NP_891559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_891559.1 307 Q80U57 307 100% 0 0

Chromosomal Locations for CCDS 18595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120877869 120878085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120883075 120883216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120886934 120887043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120888988 120889089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120889355 120889494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120891295 120891507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTTTAACGGGGAGCCTGGTCCAGCCTCGGCAGGGGCCTCCAGGAATGTAGTAAGGAGTTCCAGCATCA
GCGGTGAGATCTGTGGATCCCAGCAAGCTGGAGGTGGGGCCGGGACCACCACAGCCAAGAAACGGCGCAG
CAGCCTGGGTGCCAAGATGGTAGCTATCGTCGGCTTGACCCAGTGGAGCAAAAGCACCTTGCAGCTCCCC
CAGCCTGAAGGGGCCACCAAGAAGCTTCGAAGCAACATCCGACGGAGCACAGAGACTGGCATTGCAGTGG
AGATGCGGAGCCGTGTAACCCGCCAGGGCAGCCGGGAGTCTACCGATGGGAGCACCAACAGTAACAGCTC
CGAGGGCACGTTTATTTTTCCCACACGGCTTGGAGCTGAAAGCCAGTTCAGTGACTTTCTGGATGGCCTG
GGACCAGCCCAGATTGTGGGGCGACAGACGCTGGCCACACCCCCCATGGGAGATGTGCACATTGCCATCA
TGGACCGGAGTGGCCAGCTGGAGGTGGAAGTGATTGAAGCTCGGGGCCTGACCCCCAAACCAGGCTCCAA
ATCCCTCCCAGCCACCTATATCAAGGCTTACCTGCTGGAGAACGGGGCATGTGTAGCCAAGAAAAAGACA
AAGGTGGCCAAGAAAACATGTGATCCCTTGTACCAGCAAGCTCTGCTCTTTGATGAGGGGCCCCAAGGCA
AGGTCCTGCAGGTGATCGTCTGGGGAGACTACGGCCGTATGGACCACAAGTGCTTCATGGGTATGGCCCA
GATCATGCTGGACGAGCTGGACCTGAGTGCTGCAGTCACCGGCTGGTACAAACTCTTCCCCACATCCTCT
GTGGCCGACTCCACACTCGGATCCCTCACCAGGCGCCTGTCTCAGTCCTCTTTGGAGAGTGCCACCAGCC
CCTCGTGCTCTTAA

Translation (307 aa):
MFNGEPGPASAGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKMVAIVGLTQWSKSTLQLP
QPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSEGTFIFPTRLGAESQFSDFLDGL
GPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKAYLLENGACVAKKKT
KVAKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSS
VADSTLGSLTRRLSQSSLESATSPSCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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