NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12496.1 Public Homo sapiens 19 ZNF790 24 110 108 CCDS HistoryNCBI Gene:388536Re-query CCDS DB by CCDS ID:12496.1Re-query CCDS DB by GeneID:388536See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356725.9 ENSP00000349161.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356725.9Link to Ensembl Protein Viewer:ENSP00000349161.3Re-query CCDS DB by Nucleotide ID:ENST00000356725Re-query CCDS DB by Protein ID:ENSP00000349161
Original member Current member EBI ENST00000615484.4 ENSP00000478852.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615484.4Link to Ensembl Protein Viewer:ENSP00000478852.1Re-query CCDS DB by Nucleotide ID:ENST00000615484Re-query CCDS DB by Protein ID:ENSP00000478852
Original member Current member EBI ENST00000613249.4 ENSP00000480764.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613249.4Link to Ensembl Protein Viewer:ENSP00000480764.1Re-query CCDS DB by Nucleotide ID:ENST00000613249Re-query CCDS DB by Protein ID:ENSP00000480764
Original member Current member EBI ENST00000614179.4 ENSP00000480834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614179.4Link to Ensembl Protein Viewer:ENSP00000480834.1Re-query CCDS DB by Nucleotide ID:ENST00000614179Re-query CCDS DB by Protein ID:ENSP00000480834
Original member Current member NCBI NM_001242800.2 NP_001229729.1 Accepted alive Link to Nucleotide Sequence:NM_001242800.2Link to Protein Sequence:NP_001229729.1Re-query CCDS DB by Nucleotide ID:NM_001242800Re-query CCDS DB by Protein ID:NP_001229729Link to BLAST:NP_001229729.1
Original member Current member NCBI NM_001242801.2 NP_001229730.1 Accepted alive Link to Nucleotide Sequence:NM_001242801.2Link to Protein Sequence:NP_001229730.1Re-query CCDS DB by Nucleotide ID:NM_001242801Re-query CCDS DB by Protein ID:NP_001229730Link to BLAST:NP_001229730.1
Original member Current member NCBI NM_001242802.2 NP_001229731.1 Accepted alive Link to Nucleotide Sequence:NM_001242802.2Link to Protein Sequence:NP_001229731.1Re-query CCDS DB by Nucleotide ID:NM_001242802Re-query CCDS DB by Protein ID:NP_001229731Link to BLAST:NP_001229731.1
Original member Current member NCBI NM_206894.4 NP_996777.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_206894.4Link to Protein Sequence:NP_996777.2Re-query CCDS DB by Nucleotide ID:NM_206894Re-query CCDS DB by Protein ID:NP_996777Link to BLAST:NP_996777.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229729.1 636 Q6PG37 636 100% 0 0
NP_001229730.1 636 Q6PG37 636 100% 0 0
NP_001229731.1 636 Q6PG37 636 100% 0 0
NP_996777.2 636 Q6PG37 636 100% 0 0

Chromosomal Locations for CCDS 12496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36818433 36820114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36823285 36823380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36823667 36823790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36825611 36825619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCCCATTTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACC
TGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGGGTTTTTG
CATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAG
ACAAGAGGACCTTGCCCAGACATGCAGTCGAGGTGTCAGACCAAGAAGTTATTACCAAAAAATGGCATTT
TTGAGAGAGAAATAGCCCAATTGGAAATAATGAGAATTTGTAAAAACCACAGCCTTGACTGTTTATGTTT
TAGAGGTGACTGGGAAGGCAACACTCAGTTTCAAACACTTCAAGATAATCAAGAGGAATGCTTCAAGCAG
GTGATACGCACCTGTGAAAAAAGGCCCACTTTTAACCAGCATACAGTGTTTAATCTACACCAGAGACTTA
ATACAGGAGACAAACTGAATGAATTTAAAGAACTGGGGAAAGCCTTTATTTCTGGTTCAGATCATACTCA
ACATCAGTTAATTCACACAAGTGAGAAATTCTGTGGAGATAAAGAATGTGGGAATACCTTTCTTCCTGAT
TCAGAAGTTATTCAATATCAGACAGTTCACACTGTTAAGAAAACATATGAATGTAAAGAATGTGGGAAGT
CTTTTAGTTTACGTTCGAGTCTTACTGGTCATAAGAGAATTCATACCGGTGAGAAACCTTTTAAATGTAA
GGATTGTGGGAAAGCCTTTAGATTTCATTCACAACTTAGTGTCCATAAGCGAATTCATACTGGTGAGAAA
TCTTATGAATGTAAGGAATGTGGGAAGGCCTTTAGTTGTGGCTCAGATCTTACTCGACATCAGAGAATTC
ATACTGGTGAAAAACCCTATGAATGTAATGAATGTAGAAAGGCCTTTAGTCAGCGATCACATCTTATTAA
ACATCAGAGAATTCACACTGGTGAAAAACCTTATGAATGTAAGGAGTGTGGGAAAGCTTTTACTCGTGGA
TCACACCTAACTCAGCATCAGAGAATTCATACTGGTGAGAAATCTCATGAGTGTAAGGAATGTGGAAAAG
CCTTTATTCGTGGTTCAAATCTTGCTCAACATCAGAATGTTCATGTTGGTAGGAAACCTTATAAATGTGA
GAAATGTGGGAAAGCCTATATTTGGAGCTCACACCTTGCTCGACATCAGCGAATTCATACTGGCAGGAAA
CCTTATGAATGTAAGCAATGCGGGAAGACTTTTACTTGGGCTTCGTATCTTGCTCAACATGAGAAAATTC
ACAATGAGAGGAAATCCTATGAATGTAAGGAATGTGGAAAGACCTTTCTTCATGGCTCAGAGTTTAATCG
ACATCAGAAAATTCATACTGGTGAGAGAAACTATGAATGTAAGGAATGTGGAAAGACCTTTTTTCGTGGT
TCAGAACTTAATCGACACCAGAAAATTCATACTGGAAAGAGGCCATATGAATGTGAAGAATGTGGAAAAG
CCTTTCTCTGGGGTTCACAACTTACTCGACATCAGAGAATGCATACTGGTGAGGAACCTTACGTATGTAA
AGAATGTGGGAAATCTTTTATCTGGGGTTCACAGCTTACACGACATAAGAAAATTCATACTGATGCAGAA
CCTTATGGATGCAAGAAAAGTAGCCACATCTTTAGTCACCATTCATATTTTACTGAACAAAAAATTCATA
ATAGTGCAAATCTCTGTGAATGGACAGACTATGGGAACACCTTTAGTCATGAGTCAAACTTTGCTCAACA
CCAGAATATTTACACTTTTGAGAAATCCTATGAATTTAAAGATTTTGAGAAAGCATTTTCTTCAAGCTCT
CACTTCATTTCACTCTTGTGA

Translation (636 aa):
MAHLMMFRDVAVDFSQEEWECLDLEQRDLYRDVMLENYSNMVSLGFCIYQPEAFSLLEKGKEPWKILRDE
TRGPCPDMQSRCQTKKLLPKNGIFEREIAQLEIMRICKNHSLDCLCFRGDWEGNTQFQTLQDNQEECFKQ
VIRTCEKRPTFNQHTVFNLHQRLNTGDKLNEFKELGKAFISGSDHTQHQLIHTSEKFCGDKECGNTFLPD
SEVIQYQTVHTVKKTYECKECGKSFSLRSSLTGHKRIHTGEKPFKCKDCGKAFRFHSQLSVHKRIHTGEK
SYECKECGKAFSCGSDLTRHQRIHTGEKPYECNECRKAFSQRSHLIKHQRIHTGEKPYECKECGKAFTRG
SHLTQHQRIHTGEKSHECKECGKAFIRGSNLAQHQNVHVGRKPYKCEKCGKAYIWSSHLARHQRIHTGRK
PYECKQCGKTFTWASYLAQHEKIHNERKSYECKECGKTFLHGSEFNRHQKIHTGERNYECKECGKTFFRG
SELNRHQKIHTGKRPYECEECGKAFLWGSQLTRHQRMHTGEEPYVCKECGKSFIWGSQLTRHKKIHTDAE
PYGCKKSSHIFSHHSYFTEQKIHNSANLCEWTDYGNTFSHESNFAQHQNIYTFEKSYEFKDFEKAFSSSS
HFISLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH