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Report for CCDS17018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17018.1 Public Mus musculus 2 Rims4 23 108 98 CCDS HistoryNCBI Gene:241770Re-query CCDS DB by CCDS ID:17018.1Re-query CCDS DB by GeneID:241770See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044734.2 ENSMUSP00000045637.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044734.2Link to Ensembl Protein Viewer:ENSMUSP00000045637.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000044734Re-query CCDS DB by Protein ID:ENSMUSP00000045637
Original member NCBI NM_183023.1 NP_898844.1 Updated not alive Link to Nucleotide Sequence:NM_183023.1Link to Protein Sequence:NP_898844.1Re-query CCDS DB by Nucleotide ID:NM_183023Re-query CCDS DB by Protein ID:NP_898844
Current member NCBI NM_183023.2 NP_898844.1 Accepted alive Link to Nucleotide Sequence:NM_183023.2Link to Protein Sequence:NP_898844.1Re-query CCDS DB by Nucleotide ID:NM_183023Re-query CCDS DB by Protein ID:NP_898844Link to BLAST:NP_898844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898844.1 269 P60191 269 100% 0 0

Chromosomal Locations for CCDS 17018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163863903 163864121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163864866 163865005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163865453 163865554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163865792 163865904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163879094 163879232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163918587 163918683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGAGCGCTCGCAGAGCCGCCTCAGCCTGTCCGCCTCCTTCGAGGCGCTCGCCATCTACTTCCCGTGCA
TGAACTCCTTCGATGATGAGGACGCAGCAGACAGCCGGAGGCTGAAGGGTGCCATCCAGAGAAGCACAGA
GACGGGACTGGCCGTGGAGATGCCCAGCCGGACGCTCCGCCAAGCCAGCCATGAGTCCATCGAGGACAGC
ATGAACAGCTATGGCTCAGAGGGCAACCTTAACTATGGAGGAGTTTGTCTAGCTTCAGATGCCCAGTTCA
GTGACTTCCTGGGGAGTATGGGACCAGCACAGTTTGTGGGCCGCCAGACCCTGGCTACCACACCCATGGG
GGATGTGGAGATTGGCTTGCAGGAGCGGAATGGTCAGCTGGAGGTGGACATCATCCAGGCCCGGGGACTG
ACTGCCAAGCCAGGCTCGAAGACACTGCCAGCTGCCTATATCAAGGCCTATCTGCTGGAGAATGGTGTCT
GCATTGCCAAGAAGAAAACCAAAGTGGCCCGCAAGTCACTGGACCCGTTGTACAACCAGGTGCTTCTGTT
TCCTGAGAGTCCCCAGGGCAAAGTCCTGCAGGTAATCGTGTGGGGAAACTACGGGCGGATGGAGCGGAAG
CAGTTCATGGGCGTGGCTCGAGTCCTGCTGGAGGAACTGGACTTGACCACCCTGGCCGTGGGCTGGTACA
AGCTCTTCCCCACCTCCTCCATGGTGGACCCAGCCACAGGTCCGCTGCTTCGGCAGGCATCCCAGCTGTC
CCTCGAGAGCACCGTGGGGCCCTGTGGCGAGCGATCTTAA

Translation (269 aa):
MERSQSRLSLSASFEALAIYFPCMNSFDDEDAADSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIEDS
MNSYGSEGNLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARGL
TAKPGSKTLPAAYIKAYLLENGVCIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQVIVWGNYGRMERK
QFMGVARVLLEELDLTTLAVGWYKLFPTSSMVDPATGPLLRQASQLSLESTVGPCGERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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