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Report for CCDS46964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46964.1 Public Homo sapiens 3 CCDC39 24 110 108 CCDS HistoryNCBI Gene:339829Re-query CCDS DB by CCDS ID:46964.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476379.6 ENSP00000417960.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476379.6Link to Ensembl Protein Viewer:ENSP00000417960.2Re-query CCDS DB by Nucleotide ID:ENST00000476379Re-query CCDS DB by Protein ID:ENSP00000417960
Original member Current member NCBI NM_181426.2 NP_852091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181426.2Link to Protein Sequence:NP_852091.1Re-query CCDS DB by Nucleotide ID:NM_181426Re-query CCDS DB by Protein ID:NP_852091Link to BLAST:NP_852091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852091.1 941 Q9UFE4-1 941 100% 0 0

Chromosomal Locations for CCDS 46964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 180614921 180615077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616281 180616363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616516 180616695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616826 180616966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180619259 180619365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180619811 180619970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180631469 180631592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180641993 180642201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180644120 180644257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180647079 180647243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180648165 180648359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180651401 180651533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180652163 180652266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180654762 180654953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180659452 180659580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180659677 180659769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180660570 180660728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180661861 180662007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180663867 180663986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180679291 180679380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGAGTAGCGAATTCCTGGCTGAGCTGCACTGGGAGGATGGGTTCGCCATCCCGGTGGCGAACGAGGAGA
AC
AAGCTACTGGAAGATCAGTTGTCAAAGCTGAAGGATGAAAGAGCAAGCTTGCAAGATGAGTTACGTGA
G
TATGAAGAGCGAATTAATTCTATGACTTCTCACTTCAAAAATGTTAAGCAAGAGCTCTCAATTACACAG
TCT
CTTTGCAAAGCAAGGGAGCGTGAGACTGAAAGTGAAGAACATTTTAAGGCCATTGCTCAAAGAGAAT
TG
GGACGAGTGAAAGATGAAATTCAACGGCTGGAAAATGAGATGGCTTCAATACTGGAAAAGAAAAGTGA
T
AAAGAAAATGGCATATTTAAAGCCACTCAAAAATTGGATGGTTTGAAATGTCAAATGAACTGGGACCAG
CAA
GCATTGGAGGCCTGGTTAGAAGAATCAGCTCATAAAGATAGTGATGCTCTCACTCTCCAGAAGTATG
CA
CAACAAGATGATAATAAAATCAGGGCACTGACTCTGCAATTAGAAAGACTAACTTTGGAATGTAATCA
G
AAAAGAAAGATACTTGACAACGAACTTACAGAGACTATAAGCGCACAGTTAGAATTGGATAAAGCAGCA
CAA
GATTTTCGTAAGATTCATAATGAAAGACAAGAACTCATTAAACAATGGGAGAACACAATAGAACAGA
TG
CAGAAGAGGGATGGAGACATAGATAACTGTGCTTTGGAATTAGCAAGGATAAAGCAGGAAACGAGAGA
A
AAAGAAAATTTGGTTAAAGAAAAGATCAAGTTTTTGGAAAGTGAGATTGGGAATAACACAGAGTTTGAG
AAA
AGAATTTCTGTGGCTGATCGTAAACTTTTAAAATGTAGAACGGCATATCAGGACCATGAAACTAGTA
GA
ATTCAGCTGAAGGGTGAGCTGGATTCTTTAAAAGCCACTGTGAATAGAACTTCCAGTGATTTAGAAGC
T
CTGAGGAAAAATATTTCCAAGATAAAGAAGGACATTCATGAAGAAACAGCAAGGTTACAAAAAACTAAA
AAT
CATAATGAGATAATACAAACAAAATTAAAGGAGATAACTGAGAAAACCATGTCTGTAGAAGAGAAAG
CT
ACTAATTTGGAAGATATGCTAAAGGAGGAGGAAAAAGATGTGAAGGAAGTAGATGTTCAACTGAACCT
C
ATAAAAGGTGTGCTGTTTAAGAAAGCTCAGGAGTTACAGACTGAGACAATGAAAGAAAAAGCTGTTTTA
TCA
GAAATTGAAGGAACTCGTTCCTCTCTGAAACATCTCAACCATCAGTTACAAAAACTGGATTTTGAAA
CC
TTGAAGCAGCAAGAAATTATGTACAGCCAGGATTTTCACATTCAACAAGTGGAACGGAGAATGTCACG
G
TTAAAGGGAGAAATTAATTCAGAAGAAAAACAAGCGCTTGAAGCAAAAATTGTTGAACTTAGGAAGTCT
TTG
GAAGAGAAAAAATCTACATGTGGCCTTTTGGAAACACAGATCAAGAAGCTTCATAATGATCTTTATT
TT
ATCAAGAAGGCACATAGTAAAAACAGTGATGAAAAACAGTCCCTTATGACCAAAATAAATGAACTAAA
C
CTTTTCATCGACAGATCAGAGAAAGAACTTGATAAAGCCAAAGGTTTTAAGCAGGATTTGATGATAGAG
GAC
AATCTTTTAAAACTTGAAGTTAAGCGTACTCGAGAAATGCTTCACAGTAAGGCAGAAGAAGTTCTTT
CC
CTAGAAAAAAGAAAACAGCAATTATACACAGCAATGGAAGAGCGAACTGAAGAAATCAAGGTTCATAA
A
ACAATGCTTGCGTCACAAATAAGATATGTTGATCAAGAACGGGAAAACATAAGCACTGAGTTTCGCGAG
CGG
CTAAGTAAAATTGAGAAGCTGAAGAATAGATATGAAATTCTGACTGTTGTTATGCTGCCTCCTGAAG
GA
GAAGAGGAGAAAACACAGGCCTATTATGTAATAAAGGCTGCTCAAGAAAAAGAAGAACTTCAAAGGGA
A
GGTGACTGTTTGGATGCCAAGATCAACAAAGCTGAAAAAGAAATCTACGCTCTAGAAAATACCCTTCAA
GTG
CTGAACAGCTGTAACAACAATTATAAGCAATCTTTTAAAAAAGTGACTCCATCTAGTGATGAGTATG
AG
CTAAAAATTCAACTAGAAGAACAAAAAAGAGCTGTTGATGAAAAATACAGATACAAACAAAGACAAAT
C
AGAGAACTTCAAGAAGACATCCAGAGCATGGAAAATACATTAGATGTTATAGAACATTTGGCAAATAAT
GTT
AAAGAAAAGTTATCAGAGAAGCAGGCTTATTCATTTCAACTAAGTAAAGAAACGGAGGAGCAGAAGC
CA
AAATTAGAAAGAGTGACCAAACAGTGTGCAAAACTCACAAAGGAAATCCGTCTTTTGAAAGACACAAA
A
GATGAAACAATGGAAGAACAAGACATCAAACTTCGTGAAATGAAACAGTTTCACAAAGTTATTGATGAA
ATG
TTAGTTGATATCATAGAAGAAAATACTGAGATCCGTATTATCCTTCAAACATACTTTCAACAGAGTG
GG
TTAGAACTACCTACAGCTAGCACAAAAGGCAGTCGTCAGAGCTCTAGATCTCCTTCACATACTTCACT
A
TCAGCAAGGTCATCTAGGAGTACAAGTACATCTACTTCTCAGTCTTCAATTAAAGTACTGGAGCTTAAA
TTC
CCGGCCTCCTCTTCACTAGTAGGCAGCCCTTCTAGGCCATCTAGTGCTAGTAGTAGCTCTAGTAATG
TT
AAGAGCAAAAAGAGCAGCAAATAA


Translation (941 aa):
MSSEFLAELHWEDGFAIPVANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQ
S
LCKARERETESEEHFKAIAQRELGRVKDEIQRLENEMASILEKKSDKE
NGIFKATQKLDGLKCQMNWDQ
Q
ALEAWLEESAHKDSDALTLQKYAQQDDNKIR
ALTLQLERLTLECNQKRKILDNELTETISAQLELDKAA
Q
DFRKIHNERQELIKQWENTIEQMQKRDGDIDNCAL
ELARIKQETREKENLVKEKIKFLESEIGNNTEFE
K
RISVADRKLLKCRTAYQDHETSRIQLKGE
LDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTK
N
HNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVK
EVDVQLNLIKGVLFKKAQELQTETMKEKAVL
S
EIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQ
DFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKS
L
EEKKSTCGLLETQIKKLH
NDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIE
D
NLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERENI
STEFRE
R
LSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIK
AAQEKEELQREGDCLDAKINKAEKEIYALENTLQ
V
LNSCNNNYKQSFKKVTPS
SDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANN
V
KEKLSEKQAYSFQLSKETEEQKPKLERVTKQ
CAKLTKEIRLLKDTKDETMEEQDIKLREMKQFHKVIDE
M
LVDIIEENTEIRIILQTYFQQ
SGLELPTASTKGSRQSSRSPSHTSLSARSSRSTSTSTSQSSIKVLELK
F
PASSSLVGSPSRPSSASSSSSNVKSKKSSK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser