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Report for CCDS26441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26441.1 Public Mus musculus 13 Serpinb6a 23 108 98 CCDS HistoryNCBI Gene:20719Re-query CCDS DB by CCDS ID:26441.1Re-query CCDS DB by GeneID:20719See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043552.16 ENSMUSP00000041016.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043552.16Link to Ensembl Protein Viewer:ENSMUSP00000041016.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000043552Re-query CCDS DB by Protein ID:ENSMUSP00000041016
Original member Current member EBI ENSMUST00000076532.13 ENSMUSP00000075848.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076532.13Link to Ensembl Protein Viewer:ENSMUSP00000075848.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000076532Re-query CCDS DB by Protein ID:ENSMUSP00000075848
Original member Current member EBI ENSMUST00000167163.7 ENSMUSP00000131115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167163.7Link to Ensembl Protein Viewer:ENSMUSP00000131115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167163Re-query CCDS DB by Protein ID:ENSMUSP00000131115
Original member Current member NCBI NM_001164118.1 NP_001157590.1 Accepted alive Link to Nucleotide Sequence:NM_001164118.1Link to Protein Sequence:NP_001157590.1Re-query CCDS DB by Nucleotide ID:NM_001164118Re-query CCDS DB by Protein ID:NP_001157590Link to BLAST:NP_001157590.1
Original member Current member NCBI NM_001243192.1 NP_001230121.1 Accepted alive Link to Nucleotide Sequence:NM_001243192.1Link to Protein Sequence:NP_001230121.1Re-query CCDS DB by Nucleotide ID:NM_001243192Re-query CCDS DB by Protein ID:NP_001230121Link to BLAST:NP_001230121.1
Original member Current member NCBI NM_009254.3 NP_033280.1 Accepted alive Link to Nucleotide Sequence:NM_009254.3Link to Protein Sequence:NP_033280.1Re-query CCDS DB by Nucleotide ID:NM_009254Re-query CCDS DB by Protein ID:NP_033280Link to BLAST:NP_033280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157590.1 378 Q60854 378 100% 0 0
NP_001230121.1 378 Q60854 378 100% 0 0
NP_033280.1 378 Q60854 378 100% 0 0

Chromosomal Locations for CCDS 26441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33918041 33918442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33918741 33918896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33922926 33923068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33925312 33925429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33930025 33930177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33931472 33931636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGATCCTCTACAGGAAGCAAATGGCACCTTTGCCTTAAACCTTTTGAAAATACTGGGTGAAGACAGCT
CAAAAAATGTATTTTTGTCACCCATGAGCATATCCTCAGCCCTGGCTATGGTCTTCATGGGGGCAAAAGG
AACCACTGCTAGCCAGATGGCTCAGGCACTTGCTTTGGATAAATGCAGCGGCAATGGAGGTGGAGATGTC
CACCAGGGCTTCCAGTCCCTTCTCACCGAAGTGAACAAAACTGGCACACAGTACTTGCTCAGAACAGCCA
ACAGGCTCTTCGGGGATAAGACTTGTGATCTTTTAGCGTCTTTTAAAGATTCCTGCCTCAAGTTCTATGA
AGCAGAGTTGGAAGAGCTGGACTTTCAGGGTGCTACAGAGGAGTCCCGACAGCACATCAACACCTGGGTA
GCCAAAAAGACAGAAGATAAAATCAAAGAGGTGCTGTCTCCAGGTACAGTGAATTCTGATACATCGCTAG
TCCTTGTGAATGCCATCTACTTCAAAGGAAACTGGGAGAAGCAGTTTAACAAAGAGCATACCAGGGAGAT
GCCATTCAAAGTCAGCAAGAATGAGGAGAAACCTGTGCAAATGATGTTTAAGAAGTCTACCTTTAAGATG
ACCTATATTGGAGAGATATTCACTAAGATTCTGTTGCTTCCCTATGTCAGCAGTGAGCTGAACATGATCA
TCATGCTTCCAGATGAGCACGTTGAACTGAGTACAGTGGAAAAGGAAGTAACTTACGAGAAATTTATAGA
GTGGACAAGGCTGGACAAGATGGACGAAGAAGAGGTAGAAGTATTTCTCCCAAAGTTTAAGCTGGAGGAG
AATTACAACATGAACGATGCCCTCTACAAGTTGGGCATGACTGATGCCTTTGGCGGCAGGGCAGACTTTT
CTGGAATGTCTTCCAAGCAAGGCTTGTTTCTGTCTAAGGTTGTGCATAAGGCCTTTGTGGAGGTTAATGA
GGAGGGCACAGAGGCTGCAGCTGCTACAGCTGGCATGATGACGGTGAGGTGCATGAGATTCACTCCCCGC
TTCTGTGCCGACCACCCCTTCCTTTTCTTCATTCACCATGTTAAGACCAATGGAATTCTGTTCTGTGGCC
GGTTCTCCTCTCCCTGA

Translation (378 aa):
MDPLQEANGTFALNLLKILGEDSSKNVFLSPMSISSALAMVFMGAKGTTASQMAQALALDKCSGNGGGDV
HQGFQSLLTEVNKTGTQYLLRTANRLFGDKTCDLLASFKDSCLKFYEAELEELDFQGATEESRQHINTWV
AKKTEDKIKEVLSPGTVNSDTSLVLVNAIYFKGNWEKQFNKEHTREMPFKVSKNEEKPVQMMFKKSTFKM
TYIGEIFTKILLLPYVSSELNMIIMLPDEHVELSTVEKEVTYEKFIEWTRLDKMDEEEVEVFLPKFKLEE
NYNMNDALYKLGMTDAFGGRADFSGMSSKQGLFLSKVVHKAFVEVNEEGTEAAAATAGMMTVRCMRFTPR
FCADHPFLFFIHHVKTNGILFCGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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