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Report for CCDS15562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15562.1 Public Mus musculus 1 Cnst 23 108 98 CCDS HistoryNCBI Gene:226744Re-query CCDS DB by CCDS ID:15562.1Re-query CCDS DB by GeneID:226744See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040706.8 ENSMUSP00000048205.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040706.8Link to Ensembl Protein Viewer:ENSMUSP00000048205.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040706Re-query CCDS DB by Protein ID:ENSMUSP00000048205
Original member Current member NCBI NM_146105.3 NP_666217.2 Accepted alive Link to Nucleotide Sequence:NM_146105.3Link to Protein Sequence:NP_666217.2Re-query CCDS DB by Nucleotide ID:NM_146105Re-query CCDS DB by Protein ID:NP_666217Link to BLAST:NP_666217.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666217.2 711 Q8CBC4-1 711 100% 0 0

Chromosomal Locations for CCDS 15562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179579390 179579768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179592685 179592866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179601702 179601732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179604519 179604605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179604953 179605067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179606248 179606269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179606437 179606533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179609786 179610666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179622767 179622902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179624999 179625204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGATGACAGCGACCCTCCTACATACAGTCTGCAGATAGAGCCACAAGATGGATGTCATCCGGGGGACA
GCGTGGAAAGGAGAGTGACACGCTTGCCTTCTGTCTCAGACGAAAATGAAAATCAGCTTGCCGGAGACGG
GCCTGCGGGTCTGACCACCAGTGAAGGCGCCATGGGGAGAGCCACAGTGTCTGAACAGGACAGTCTCAAC
AATAACGAAAGCTTCCCGTCCAGCTGCGAGGCAGCCCCCACGGAGAACGCAGAAAACACTCCAAGCGAAG
GTCCCAAAGATGACCCACCTTCCTTGGGACAGGACCAAAAACTACCTGCAAAAAGAAGTCCAAGGGCCAA
AAAAAGCTCTCCTAAGAGTGCACCTCCAGGTGATGCCGTACCTGTAATGCAGACGCAGAATGCAACGTCG
CAGGCTGCTGGCGAGGAGGAGGCTGCGGGAGTGAACGCGAATGACCCCCCCAAAGCGCCAGCGCTGCAGC
CACTCTTCTCGCTGATCCGAGGCGAGGTGGCACAGATGGACTCCAGGGCACTTCCCCTCTTCCTCCACCA
GGTAGCTGAGACCTATTTCCAGGAAGAGGACTATGAGAAAGCAATGAAATTTATTCAGCTTGAAAGGCTG
TATCATGAGCAATTGCTTGCAAATCTTTCTGCCATTCAGGAACAATGGGAAACAAAATGGAAAGCTGTCC
AGCCACGTACAGTGACGCCTCTGAGAAATTCAGAAAAGGGATTTAATGGTGAAGATTTTGAACAGCTTGC
TAAAATTTGCACAACTCACCAAGACCCTCTCTTGTCCAAGCTTAAGACAGCGCCTGTGGAACCGTCACCA
GAGAGGAAAAGCCTTGCAAGGGCGATAATGTCTGAAGAGGCAGTGGGGACAGAAGCAGCAGCCAAAGAGC
CAGAGATTGAAACCTGTCCCAGCACGGATCCAAGTGGAGACCGGCATGAGGAGGAGCCCCAGGAGAGCAG
CCCCGGCTGTCATCAGATGGAGTGGCAGACAGCTTCCCCCGAGCTTCCAGGGACTGCAGGAAAGGACCAC
ACGGAGGAGCTGCCCAGCAGCACCAATGCCACACTGGACCTCCACACCCAGTCCCTGGAGACAGCCGGGA
GCAGGTCAGGGCCAGCTGCTGCCTCGAATGCCTGCAAAGACAGCAGCTGCGTGCCGGCGCCTCCCACAGA
GGACCACTGCGGTGTGGCCAGAGACCCTAAGGTGGCTCCTCCTAGTGAATCAGTGGCAGAGCAGAAGCTC
TCCACCGGCGACGACGGTGCACTGCCTGGGTTGATTTCAGAGGGTAAATATTCACAGGCACACCGAAAAG
AACTCTGCCTTCCTCTGCAGGACGCATTTGAAGCGCTGCCCAGGGACCAGCCTCACAGCAGTGAGGTAGC
TGAGCCGCGGCAGCCTGATGTCACGGCCAGTGATGGGAAATCAGCACAGAGTCAGGCTGGCTTGGAGACT
GGTCCTGAGAGTGCACTCTGTGGTGACAGGAAAGCCTGTGACGTAAGCACACTGTGTCTGGAAGTGTGTA
TGGCCCCAGAAGAAAGGCGGGACAGTGAAGACCGAGTGAGTAAGGAAACGGAAGACTATCTGCACAGCCT
TTTGGAGAGATGCTTGAAGGATGCTGAAGATTCCCTGTCCTACGAGGACATCCAGGACGACGACTCTGAC
CTCCTCCAAGACCTCTCTCCTGAAGAAGCGTCCTACAGTCTCCAGGAGGATCTGCCTCCTGACGAGAGCA
CGCTCTCCCTTGATGATCTGGCCAAGAAGATAGAGATCGCAGAGGCCATTCCTGCAGAAGGGCTGGTGTC
CATACTGAAGAAGAGGAATGACACAGTAGGCAGCCATCCTGCACAGATGCAGCAGAAGCCGGCTAAGCGC
AGAGTGCGATTCCAGGAAATAGACGACAACCTGGAGCAAGATGAGGTTGGTGGTGGTTCCTGCATCCTGC
TCATCTTGCTGTGCATAGCCACTGTCTTCCTCAGTGTTGGAGGAACTGCACTCTACTGCACCCTGGGCAA
CATTGAGTCACCTGTTTGCACGGACTTTGCCGACAACGTGGACTTCTATTACACTAAGCTGCTGCAGGGG
GTGGCAGGGCTGAAACACTGGGTCTACCTCTCCTAG

Translation (711 aa):
MDDSDPPTYSLQIEPQDGCHPGDSVERRVTRLPSVSDENENQLAGDGPAGLTTSEGAMGRATVSEQDSLN
NNESFPSSCEAAPTENAENTPSEGPKDDPPSLGQDQKLPAKRSPRAKKSSPKSAPPGDAVPVMQTQNATS
QAAGEEEAAGVNANDPPKAPALQPLFSLIRGEVAQMDSRALPLFLHQVAETYFQEEDYEKAMKFIQLERL
YHEQLLANLSAIQEQWETKWKAVQPRTVTPLRNSEKGFNGEDFEQLAKICTTHQDPLLSKLKTAPVEPSP
ERKSLARAIMSEEAVGTEAAAKEPEIETCPSTDPSGDRHEEEPQESSPGCHQMEWQTASPELPGTAGKDH
TEELPSSTNATLDLHTQSLETAGSRSGPAAASNACKDSSCVPAPPTEDHCGVARDPKVAPPSESVAEQKL
STGDDGALPGLISEGKYSQAHRKELCLPLQDAFEALPRDQPHSSEVAEPRQPDVTASDGKSAQSQAGLET
GPESALCGDRKACDVSTLCLEVCMAPEERRDSEDRVSKETEDYLHSLLERCLKDAEDSLSYEDIQDDDSD
LLQDLSPEEASYSLQEDLPPDESTLSLDDLAKKIEIAEAIPAEGLVSILKKRNDTVGSHPAQMQQKPAKR
RVRFQEIDDNLEQDEVGGGSCILLILLCIATVFLSVGGTALYCTLGNIESPVCTDFADNVDFYYTKLLQG
VAGLKHWVYLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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