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Report for CCDS40488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40488.1 Public Mus musculus 8 Cdyl2 23 108 98 CCDS HistoryNCBI Gene:75796Re-query CCDS DB by CCDS ID:40488.1Re-query CCDS DB by GeneID:75796See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109102.3 ENSMUSP00000104730.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109102.3Link to Ensembl Protein Viewer:ENSMUSP00000104730.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109102Re-query CCDS DB by Protein ID:ENSMUSP00000104730
Original member Current member NCBI NM_029441.3 NP_083717.1 Accepted alive Link to Nucleotide Sequence:NM_029441.3Link to Protein Sequence:NP_083717.1Re-query CCDS DB by Nucleotide ID:NM_029441Re-query CCDS DB by Protein ID:NP_083717Link to BLAST:NP_083717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083717.1 503 Q9D5D8 503 100% 0 0

Chromosomal Locations for CCDS 40488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 116575129 116575287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116579168 116579311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116583007 116583217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116589250 116589422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116594962 116595179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116623784 116624366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116732798 116732821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGCTTCTGGGGACCTTTACGAGGTTGAAAGGATTGTGGACAAGAGGAAGAACAAGAAGGGGAAATGGG
AATATCTTATCCGATGGAAAGGCTACGGCAGCACGGAGGACACGTGGGAACCGGAGCATCACCTCCTGCA
CTGTGAGGAGTTTATCGACGAGTTCAACGGGCTCCACTTGTCCAAGGATAAGAGGGTGAAGTCAGGGAAG
CAGGCCGGAGCCTCCAAGCTCCTCCGCGACGCCCGCGGCCTGCCAGTGGAAAGACTCTCCCATCGGCCTC
TGGAACCCGGGAAGAGCAAACCATCTTCCCACAAGCGGAAGCGCGTCAACTCTCCCCTGTCCAGGCCCAA
GAAGGGGTCTTCGGGTAAGGCTCCAGACAGGGCCACCAAGACTGTGTCCTATAGGACTACCCCCAGTGGC
TTACAGATCATGCCCCTGAAGAAGGCTCAGAACGGCCTGGAGAACGGAGATGCCGGCTCTGAGAAGGACG
AGTCACACTTTGGAAACGGGTCCCATCAGCCGGATCTGGAGTTGAACGACCAGCTTGGAGAGCAGGAGGC
CAGTGACTGCGACGGGACCCACTCCGCGCTGGTGGAGAATGGAGTTGGCTCTGCTCTGACCAATGGAGGC
CTGAACCTGCACAGCCCTGTGAAGAGGAAGCTGGAGACGGAGAAGGACTATGTCTTTGACAAAAGGCTCA
GGTACAGCGTCCGCCAGAATGAAAGCAACTGTCGGTTTCGTGACATCGTGGTGAGGAAGGAAGAGGGCTT
CACACACATTCTTCTGTCCAGCCAGACTTCGGATAACAATGCACTGACTCCTGAGATCATGAAGGAAGTC
CGGCGAGCCCTGTGCAACGCGGCCACAGATGACAGCAAGCTACTGCTGCTCAGTGCCGTGGGCAGTGTGT
TCTGCAGCGGACTAGACTATTCCTACCTGATCGGCCGGCTGTCCAGCGACCGGAGAAAGGAGAGCACTCG
AATCGCAGAAGCTATCAGGGACTTCGTGAAGGCCTTTATCCAGTTTAAGAAACCCATCGTGGTAGCCATT
AATGGGCCAGCATTGGGCCTGGGAGCCTCCATCCTGCCCCTCTGTGACATCGTATGGGCCAGTGAGAAGG
CCTGGTTTCAGACACCATACGCTACCATCCGACTCACGCCTGCTGGCTGTTCCTCCTACACCTTCCCCCA
GATCCTGGGTGTGGCGCTGGCCAATGAAATGCTGTTTTGTGGGCGGAAACTCACTGCCCAAGAGGCATGC
AGCCGGGGCCTTGTGTCACAGGTCTTCTGGCCCACGACTTTCAGCCAAGAGGTCATGCTGCGGGTGAAGG
AGATGGCATCTTGCAGTGCTGTGGTTTTGGAGGAGTCCAAATGCCTGGTCCGAAGCTTCCTGAAGTCAGT
GCTGGAGGAGGTGAACGAGAAGGAGTGCGTCATGCTGAAGCAGCTCTGGAGCTCCTCCAAGGGCCTGGAC
TCCCTGTTCAGCTATCTGCAGGACAAAATCTATGAAGTCTGA

Translation (503 aa):
MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHLSKDKRVKSGK
QAGASKLLRDARGLPVERLSHRPLEPGKSKPSSHKRKRVNSPLSRPKKGSSGKAPDRATKTVSYRTTPSG
LQIMPLKKAQNGLENGDAGSEKDESHFGNGSHQPDLELNDQLGEQEASDCDGTHSALVENGVGSALTNGG
LNLHSPVKRKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEV
RRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAI
NGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEAC
SRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEEVNEKECVMLKQLWSSSKGLD
SLFSYLQDKIYEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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