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Report for CCDS18900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18900.1 Public Mus musculus 4 Pramel4 23 108 98 CCDS HistoryNCBI Gene:347710Re-query CCDS DB by CCDS ID:18900.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091676.11 ENSMUSP00000089265.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091676.11Link to Ensembl Protein Viewer:ENSMUSP00000089265.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091676Re-query CCDS DB by Protein ID:ENSMUSP00000089265
Original member Current member EBI ENSMUST00000094520.4 ENSMUSP00000092097.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094520.4Link to Ensembl Protein Viewer:ENSMUSP00000092097.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094520Re-query CCDS DB by Protein ID:ENSMUSP00000092097
Original member Current member NCBI NM_001001319.4 NP_001001319.2 Accepted alive Link to Nucleotide Sequence:NM_001001319.4Link to Protein Sequence:NP_001001319.2Re-query CCDS DB by Nucleotide ID:NM_001001319Re-query CCDS DB by Protein ID:NP_001001319Link to BLAST:NP_001001319.2

Chromosomal Locations for CCDS 18900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 144065755 144066041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144066543 144067142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144067932 144068547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAGCTTCAAGGACCCACCAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTAAAAGATGAAGCCTTGA
CTATCTCTGCTCTGCCGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAG
ACAACGTAAGATCCTGAGCCTGATGGTGGCAACATGGCCCTTCCCAGTCCTTCCTGTGGGAGCTCTGTGT
GGGATTGATCACCTGGAGACCCTGAAAGCTGTACTAGATGGCCTTGATTTGCTGATGTCACAAAAGGATC
GACCTAGCAGGTGGAACCTACAAGTGCTTGATTTGCGAGATGCCCACCAGGACTTCTGGGATGGTTGGGC
TGGACTACTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAGAACCAACCAGTGGGAAATCATCCCATC
CCAGGGGGGAAACAGACCATAAGTATAAAAATGAATCTTTCCCTCAAGTACTGCCGACGACACTCTCATT
GTGAAAACCTAAACTATTTGTATTATTGGGCCAAGCAGAGAAAAGATGTGATACAGGTGATCTTTGAGAA
GCTGGAGTTTACAGGCAAGCACTGTCTCCGACTGAAGTTGTGGCGGTTGTTGAAGTTGTCTTTTGTAGCC
TCAATCCAGGAATTGACAATAAAGTCCATACACTGGGATATATATAACCTTGCATTGATAGCCTCTTGCC
TGGGCCAGATGAAAAACCTCCAGAAACTCATTCTCATGAACATCAGGAGACCTTCTTCCCTTACGGACCT
ACAGGAAGCCCGTATTATTACAGAGATCTTTTCCGAGTTCTCCAAACTGCATAAGCTCCAGCATCTCTAT
GTGAATGATGTCTACTTCCTGAAAGAACGCCTGGACCTAATGCTCAGGTGTTTTGAGCGTCCATTAGAGA
CCCTTACTATCACTTATTGCAAGCTTTCAGAATCAGACATGAGGTATCTGTCCCAGTGTCCAAGCATCCA
TCAGCTCAAATACCTGGACATGAGTTACACCACATTCAAGCCTTCAAGTCATCGATTTCTAGGATTTCTC
GGAAGCCTACTAGAAAGACTGACAGCTACTCTGCAGACATTAAAATTGGAGTGCTTTCACCTCACGGACT
CCCGAATCCGTGACCTTCTGCCTGGGCTGAGCCAGTGTTCCCAGCTCACTGAAGTCGATTTTGTGGAGAA
CAAATTTTCCATGGTCAGCCTGAAAACGCTGCTGCAACATACTGCCAACCTCACACAGCTGACCCTGGAG
AAGTACCCTGCACCTGATGAAGTCTATGATGACAGTCTTTGTGTTATTCCAGACAGATTTGTACAACTTT
GTTCTGAGCTTATGAACACACTCAAGGGTGTAAGGCAGCCAAAGCAGGTCTATTTTGAGAGTACAATATA
TTCACCTAATTTTGAATACCTCGTGTATAATTTGGAGGGCATGGTATCTTCTGAGCCTTTAAGAAGGAGA
GGTCGTGGGATGGTGATATATATCAGTGGGTAG

Translation (500 aa):
MSFKDPPTLQQLARRSLLKDEALTISALPNLPVQLFPPLFKDAFTSRQRKILSLMVATWPFPVLPVGALC
GIDHLETLKAVLDGLDLLMSQKDRPSRWNLQVLDLRDAHQDFWDGWAGLLHEVCSQDVFGKNQPVGNHPI
PGGKQTISIKMNLSLKYCRRHSHCENLNYLYYWAKQRKDVIQVIFEKLEFTGKHCLRLKLWRLLKLSFVA
SIQELTIKSIHWDIYNLALIASCLGQMKNLQKLILMNIRRPSSLTDLQEARIITEIFSEFSKLHKLQHLY
VNDVYFLKERLDLMLRCFERPLETLTITYCKLSESDMRYLSQCPSIHQLKYLDMSYTTFKPSSHRFLGFL
GSLLERLTATLQTLKLECFHLTDSRIRDLLPGLSQCSQLTEVDFVENKFSMVSLKTLLQHTANLTQLTLE
KYPAPDEVYDDSLCVIPDRFVQLCSELMNTLKGVRQPKQVYFESTIYSPNFEYLVYNLEGMVSSEPLRRR
GRGMVIYISG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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