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Report for CCDS55333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55333.1 Public Homo sapiens 9 PTBP3 24 110 108 CCDS HistoryNCBI Gene:9991Re-query CCDS DB by CCDS ID:55333.1Re-query CCDS DB by GeneID:9991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334318.10 ENSP00000334499.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334318.10Link to Ensembl Protein Viewer:ENSP00000334499.6Re-query CCDS DB by Nucleotide ID:ENST00000334318Re-query CCDS DB by Protein ID:ENSP00000334499
Original member Current member NCBI NM_001163790.2 NP_001157262.1 Accepted alive Link to Nucleotide Sequence:NM_001163790.2Link to Protein Sequence:NP_001157262.1Re-query CCDS DB by Nucleotide ID:NM_001163790Re-query CCDS DB by Protein ID:NP_001157262Link to BLAST:NP_001157262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157262.1 555 O95758-5 555 100% 0 0

Chromosomal Locations for CCDS 55333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112223851 112223983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112224133 112224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112227411 112227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112228380 112228472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112231380 112231413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112232099 112232238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112234820 112234897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112250929 112251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112252678 112252788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112262435 112262599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112268049 112268195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112275844 112276013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112297832 112297916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112330441 112330474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112333470 112333477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGATGGTGTTGTTACAGATCTTATAACAGTCGGTTTAAAGCGGGGATCTGATGAGCTTCTTTCTTCTG
GCATCATTAACGGACCTTTTACCATGAATAGTTCTACTCCTTCTACAGGTGTGTATGCTAATGGGAATGA
CAGCAAGAAATTTAAACGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCA
TGTGATGTCACCGAAGCAGAGATCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGT
TGAAAGGAAAAAGCCAGGCTTTCTTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTA
CACTCCTATTACTCCTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGAGAACTTAAG
ACTGACAATCTACCTAATCAAGCTCGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCCAATCAGGAA
GCCTGGCCCTTTCTGGAGGTCCTTCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGTGCTTCGAAT
AATTATTGAAAACCTCTTTTACCCTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAATTTGGCACA
GTCTTGAAGATTATCACCTTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTAA
ATGCACATTATGCCAAAATGGCTCTGGATGGCCAGAATATCTATAATGCATGCTGCACTCTGCGCATTGA
CTTCTCCAAGCTCACCAGCCTTAATGTGAAATATAATAATGACAAAAGCAGAGACTTCACTCGCTTAGAC
CTTCCTACTGGTGATGGCCAGCCATCCCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAA
TTTCTTCACCATATGCAGGGGCTGCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTACAGGTCTATC
AGTTCCAGCTGTTCCTGGAGCTCTTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGAAGGATGGCC
ATTCCTGGGGCTAGTGGTATACCAGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTGATCTTATCA
CACCACATGGGCTTTTTATCCTATTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAA
GAAAGAAAATGCCTTGGTTCAGATGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCATCTAAGTGGT
CAGAGACTTTATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGG
GACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTC
TAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCTTCTGTTACA
GTGGATGATCTGAAGAACCTTTTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAAG
ATCGCAAAATGGCGCTCATTCAATTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGAGCTTCATAA
CCATGACCTTGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCTACAATCTGA

Translation (555 aa):
MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTGVYANGNDSKKFKRDRPPCSPSRVLHLRKIP
CDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELK
TDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGT
VLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD
LPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMA
IPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSG
QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVT
VDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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