NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25518.1 Public Mus musculus 11 Plekhm1 23 108 98 CCDS HistoryNCBI Gene:353047Re-query CCDS DB by CCDS ID:25518.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041272.9 ENSMUSP00000047327.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041272.9Link to Ensembl Protein Viewer:ENSMUSP00000047327.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041272Re-query CCDS DB by Protein ID:ENSMUSP00000047327
Original member Current member NCBI NM_183034.2 NP_898855.1 Accepted alive Link to Nucleotide Sequence:NM_183034.2Link to Protein Sequence:NP_898855.1Re-query CCDS DB by Nucleotide ID:NM_183034Re-query CCDS DB by Protein ID:NP_898855Link to BLAST:NP_898855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898855.1 1074 Q7TSI1 1074 100% 0 0

Chromosomal Locations for CCDS 25518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103366882 103366993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103367598 103367755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103368108 103368171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103370862 103371055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103373940 103374085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103376593 103377513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103380034 103380352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103386958 103387348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103394688 103395314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103397027 103397274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103403825 103403869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGCTCTCAGTGGAGAATGGCCTGGACCCTCGTGCTGCCATCCAGGTCATCAAGAAGAAGCTCGTGGGAT
CCGTGAAGGCTCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCCAA
CACCATGTGCAGTGCCCTGGAGGCTGTGTTCATCCACGGCCTGCATGCCAAGCACATCCGCGCCGAGGCT
GGCGGCAAAAGGAAGAAGCACACTCACCAGAAGGCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAG
CCATCACCCACAGACACATTGTCTCAGATTTGGAGCACCTGGTCTTCATCAACACAGATGTAGGCCGTTG
CCGAGCCTGGCTGCGGTTGGCCCTCAATGACGGTCTGATGGAGTGCTATCTGAAACTGCTCCTGCAGGAA
CCTGCACGGTTGTGCGAGTACTATCAGCCCACAGCCCTGCTTCGAGATGCCGAGGAGGCTGAGTTCCTCC
TGAGCTTCCTGCAAGGACTAACATCCTTGTCCTTCGAACTCTCCTACAAGTCAGCCATCTTAAATGAATG
GACACTCACCCCATTGTCGCTCTCTGGGCTTTGCCCCCTCTCTGAACTCGACCCTCTCACTACCTCTGGT
GCAGAACTACAGCGGAAAGAGTCTCTGGATTCAATTTCCCATTCCTCGGGCTCTGAGGACATCGAAGTCC
AACACTCAGGCCATAAGATCCGCAGGAACAGGAAGCTCACTGCCTCTTCCCTCAGCCTGGACACAGCCAG
TTCATCCCAGCTGTCCTGCAGCCTAAATTCTGACAGCTGCCTGCTCCAAGAGAATGGTCCCAAGAGTCCA
GACCATTCTGAGGAACCCATGTCCTATGACTCAGATCTGGGCATGGCAAACACCGATGACCCCGACAGGT
CTCTGCAAGAGGTGTTGTCGGAATTCAGCAAAGCCCAGGTAAATTCTGCACCAAGCAGCGGACCAAACCA
AGAGCCAGACACCCCCATGTTCCAGACGCCCCTCTCCCTCCATAGCCTAGCTACCAGCACACACCTGCAC
TTTGAGGGATCTGAAGAGCTCTTTCCTGCCCACAAATCCTCTGGGACATCAAGTGGTGGCCATAAGCATC
AGCTACTGCCCCAGGAGACCCCAGACGAGAAGCAGCTAGGCACTGCCCAAGCTGGCCCTGCACAGAGCAC
TTCAGACCAGCAGCCTTCTAGTCCTGTGGGTGGAGCAGCTGGCCAAGGGAGTGGCCCTTGGAAGGCCCTG
GAGTATGGCAGAGTCGGACCGAAGCTTGTGGTTTCCTCTCCTACGAGTCCGAAAGGCAAGAGCTGGATTT
CTGAAGATGACTTCTGCCGACCTCCCCAGGAGCCTGCTCTAAAGAGCGCTGCAGGTCTCTGCACATCTCC
TGTGCAAGACACTCCAGAGTCAAGGGCTGCTCTCCACGGGCCTTTTTCTCAAGGACCAAGAAAGAGCTGT
TCCTTGGGGGCATTAGACAAAGCATGTGTGCCCTCACAGGCCTGTGGAAATGCCCAGCCAGCTCCAGCCC
CAGCTCCAGCTCCAGCCCCAGCCCCAGCCCCAGCTCCAGGGGTGACACAAGACCATAAAAACTTCTGTGT
GGTGCACCGAAGGCAAATGGGGCTGTCCAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTGGCCCGG
CGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCGTTGGAGTTCCGCCTCTACTTGA
GTGATGAGGAACGCACCTGTGTGGAGAGCTGCTCCCTGCTCCGATGTGAGGCTGTGGGGCCAGCACACAG
TGATGGACGTTTTGAGTTGGTCTTCTCGGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAAGACGAGGCT
GAGGACTGGCTTGACCGCGTACGGGAGGCTCTGCAGAAGGTGCGCCCTCAGCAGGAAGATGAGTGGGTGA
ATATCCAGTACCCAGACCAGGCTGAGGATGCCCCAGAGGCTCCACCAGACAGCCTCCCCCCCTATTCAAC
TCTACTCCCCGAGCCTGCGGGTGCCCAGGGCATGCAGTTGGACTGGACATCTGCCCAGGTTCCAGAACCA
GATGCTATCAAAGAGTCCCTTTTGTATCTGTATGCAGACCGGACCTGGGTCCCCTATATCTTTTCCCTGT
CCTTGGAGTCTCTGAAATGTTTCCGAGTGAGAAACAATGAGAAGATGCTAAGTGATAGCCATGGAGTGGA
GACCATCCGAGACATCCTGCCAGACACCAGCCTTGGGGGCCCAGCCTTCTTCAAAATCATCACGGCCAAG
GCCGTCCTGAAACTGCAGGCCAAAAACACCGAGGAGGCCACCCACTGGAGAGACCTGGTCCGGAAAGTGC
TGGCATCTTACCTAGAGTCAGCTGAGGAGGCTGTGACACTTGGTGGGAGTCTGGATGAAAAATGTCAGGA
GGTGCTGAAGTTTGCTACCAGGGAGAACGGCTTCCTGCTACAGTACCTTGTGGCCATCCCGACCGAGAAG
GGCCTCGACTCCCAGGGCTGCTTCTGCGCAGGCTGCTCCCGACAGATCGGCTTCTCCTTTGTACGACCCA
AGCTCTGTGCCTTCTCTGGCCTGTATTACTGTGACTTCTGCCACCAAGACGATGCCTCAGTGATTCCAGC
CAGAATCATCCACAACTGGGACCTCACGAAGCGCCCGGTATGCCGGCAGGCCCTGAAGTTCCTGGCCCAG
ATCCGGGCCCAACCTCTCATCAACCTGCAGCTGGTGAACGCCTCTCTGTATGAGCATGTGGAACGCATGC
ACCTCATTGGCAGGAGCCGGGAGCAGCTGAAACTTCTGGGGGACTACCTGGGCCTGTGCCGAAGTGGTGC
TCTGAAGGAGTTGTGCAAAAGGCTGAGCCACAGGAATTATCTCCTGGAGTCTCCACACAGATTCAGTGTT
GCTGACCTCCAGCAGATTGCAGAGGGGGTATATGAAGGGTTCCTCAAAGCCCTGATTGAATTCGCATCCC
AGCATGTCTACCACTGTGACCTGTGCACCCAGCGAGGCTTCATCTGCCAGATCTGCCACCACCAGGACAT
CATCTTTCCCTTTGAGTTTGACACCACAGTCAGGTGTGCTGAATGCAGAACTGTCTTCCATCAGAGCTGC
CAGGCTGTGGTGAGGAAGGGCTGTCCCCGATGTGCCCGCCGGCGCAAGTACCAGGAACAGAACGTTGTCA
GTTAA

Translation (1074 aa):
MLSVENGLDPRAAIQVIKKKLVGSVKALQKQHVSLDTVVTSEDGDANTMCSALEAVFIHGLHAKHIRAEA
GGKRKKHTHQKALPQPVFWPLLKAITHRHIVSDLEHLVFINTDVGRCRAWLRLALNDGLMECYLKLLLQE
PARLCEYYQPTALLRDAEEAEFLLSFLQGLTSLSFELSYKSAILNEWTLTPLSLSGLCPLSELDPLTTSG
AELQRKESLDSISHSSGSEDIEVQHSGHKIRRNRKLTASSLSLDTASSSQLSCSLNSDSCLLQENGPKSP
DHSEEPMSYDSDLGMANTDDPDRSLQEVLSEFSKAQVNSAPSSGPNQEPDTPMFQTPLSLHSLATSTHLH
FEGSEELFPAHKSSGTSSGGHKHQLLPQETPDEKQLGTAQAGPAQSTSDQQPSSPVGGAAGQGSGPWKAL
EYGRVGPKLVVSSPTSPKGKSWISEDDFCRPPQEPALKSAAGLCTSPVQDTPESRAALHGPFSQGPRKSC
SLGALDKACVPSQACGNAQPAPAPAPAPAPAPAPAPGVTQDHKNFCVVHRRQMGLSNPFRGLMKLGTVAR
RGAMGIWKEFFCELSPLEFRLYLSDEERTCVESCSLLRCEAVGPAHSDGRFELVFSGKKLALRASSQDEA
EDWLDRVREALQKVRPQQEDEWVNIQYPDQAEDAPEAPPDSLPPYSTLLPEPAGAQGMQLDWTSAQVPEP
DAIKESLLYLYADRTWVPYIFSLSLESLKCFRVRNNEKMLSDSHGVETIRDILPDTSLGGPAFFKIITAK
AVLKLQAKNTEEATHWRDLVRKVLASYLESAEEAVTLGGSLDEKCQEVLKFATRENGFLLQYLVAIPTEK
GLDSQGCFCAGCSRQIGFSFVRPKLCAFSGLYYCDFCHQDDASVIPARIIHNWDLTKRPVCRQALKFLAQ
IRAQPLINLQLVNASLYEHVERMHLIGRSREQLKLLGDYLGLCRSGALKELCKRLSHRNYLLESPHRFSV
ADLQQIAEGVYEGFLKALIEFASQHVYHCDLCTQRGFICQICHHQDIIFPFEFDTTVRCAECRTVFHQSC
QAVVRKGCPRCARRRKYQEQNVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH