NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11374.1 Public Homo sapiens 17 KRT26 24 110 108 CCDS HistoryNCBI Gene:353288Re-query CCDS DB by CCDS ID:11374.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335552.5 ENSP00000334798.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335552.5Link to Ensembl Protein Viewer:ENSP00000334798.4Re-query CCDS DB by Nucleotide ID:ENST00000335552Re-query CCDS DB by Protein ID:ENSP00000334798
Original member Current member NCBI NM_181539.5 NP_853517.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181539.5Link to Protein Sequence:NP_853517.2Re-query CCDS DB by Nucleotide ID:NM_181539Re-query CCDS DB by Protein ID:NP_853517Link to BLAST:NP_853517.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853517.2 468 Q7Z3Y9 468 100% 0 0

Chromosomal Locations for CCDS 11374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40766515 40766666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40767586 40767653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40768879 40769096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40769754 40769879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40769961 40770122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40770253 40770409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40771154 40771236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40771673 40772113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGTCTTTTCGACTTTCTGGTGGATCCAGGAGGATCTGCTCGCGAACTGGGTCTGGTAGGCTGTCCGGTG
GAGGAACAGGCTTCGTGGCTGGGAATGTGTGTGTTGGATCGGGAGCAAGAAGCAGCTTTTCTTGTACTCT
TGAGGGCATCTCTTCTGGAGGAAGCTTCTGCAATAGCGGTGGAGGGTTGGGAAGTGGTGCCTGTGCTGGT
TTTCTTGGCAATGAGCACAGCCTCCTCTCTGGGAATGAAAAGGTGACCATGCAGAATCTCAACGACCGCC
TGGCATCCTACCTGGACCATGTGCATGCTCTAGAGGAGGCCAACGCAGACCTGGAGCAGAAGATCAAGGG
CTGGTACGAGAAATGTGAGCCTGGCTCTTCCCGGGAACACGATCATGACTATAGCAGATACTTCTCAGTC
ATAGAAGATCTTAAAAGGCAGATTATTTCTGCGACCATCTGCAATGCCAGCATTGTTCTACAAAATGACA
ATGCCAGACTGACCGCTGATGACTTCAGGCTGAAGTATGAAAATGAGCTGGCTCTGCACCACAGTGTTGA
GGCCGACACCAGTGGTCTTCGCAGAGTGTTGGATGAACTGACCCTTTGTACAACCGACCTGGAGATACAG
TGTGAGACCCTCAGTGAGGAATTGACCTACCTCAAAAAAAGTCATGAGGAGGAAATGGAAGTCTTGCAAT
ATACAGCTGGGGGGAACGTGAACGTGGAGATGAATGCAACCCCAGGAGTGGACCTAACTGTCCTGTTGAA
CAACATGAGGGCTGAGTATGAGGACTTGGCTGAGCAGAACCGCAAAGATGCTGAAGCCTGGTTCAACGAG
AGGAGTGCAACGCTGCAACAACAGATTTCCGATCATGAGGGAGCAGCCACAGCAGCCAGAAATGAGCTGA
CCGAATTAAAACGCAATCTGCAAACCCTGGAAATAGAACTTCAGTCCCTCATGGCTGTGAAACATTCCTA
TGAATGCTCCTTGGCTGAGACTGAAGGAAATTACTGCAATCAACTCCAGCAAATTCAGGATCAGATAGGG
GTGATGGAGGAACAACTGCAACAGATTCGAACAGAAACAGAAGGCCAGAAGCTGGAGTATGAACAGCTTC
TTGATGTAAAAATATTTTTAGAAAAAGAAATTGACATTTATTGCAACTTACTAGATGGAGAAGAAAGAAA
AAGCAAATCCACATGTTACAAATCAAAAGGATACAGGCCTGTGAATTCTGGAAATCAAGCCAAAGACTCA
ACAGAAGAAACTATTGTTAAAACAGTGGTTGAGGAACTGGATCAAATTGGCAATCTCCTTTCACTGAGAG
TCCACTCAGTTGAAGAAAAGTCCTCTAAAATAAGCAACATTACAGTAGAGCAACGAGTACCTTCTAAAGC
ACCATAA

Translation (468 aa):
MSFRLSGGSRRICSRTGSGRLSGGGTGFVAGNVCVGSGARSSFSCTLEGISSGGSFCNSGGGLGSGACAG
FLGNEHSLLSGNEKVTMQNLNDRLASYLDHVHALEEANADLEQKIKGWYEKCEPGSSREHDHDYSRYFSV
IEDLKRQIISATICNASIVLQNDNARLTADDFRLKYENELALHHSVEADTSGLRRVLDELTLCTTDLEIQ
CETLSEELTYLKKSHEEEMEVLQYTAGGNVNVEMNATPGVDLTVLLNNMRAEYEDLAEQNRKDAEAWFNE
RSATLQQQISDHEGAATAARNELTELKRNLQTLEIELQSLMAVKHSYECSLAETEGNYCNQLQQIQDQIG
VMEEQLQQIRTETEGQKLEYEQLLDVKIFLEKEIDIYCNLLDGEERKSKSTCYKSKGYRPVNSGNQAKDS
TEETIVKTVVEELDQIGNLLSLRVHSVEEKSSKISNITVEQRVPSKAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH