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Report for CCDS18609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18609.1 Public Mus musculus 4 Oxct2b 23 108 98 CCDS HistoryNCBI Gene:353371Re-query CCDS DB by CCDS ID:18609.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102648.5 ENSMUSP00000099708.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102648.5Link to Ensembl Protein Viewer:ENSMUSP00000099708.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102648Re-query CCDS DB by Protein ID:ENSMUSP00000099708
Original member Current member NCBI NM_181859.3 NP_862907.2 Accepted alive Link to Nucleotide Sequence:NM_181859.3Link to Protein Sequence:NP_862907.2Re-query CCDS DB by Nucleotide ID:NM_181859Re-query CCDS DB by Protein ID:NP_862907Link to BLAST:NP_862907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862907.2 520 Q9ESL0 520 99.8077% 0 1

Chromosomal Locations for CCDS 18609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123116289 123117851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGCGCTGAGGCTTCTGGCCTGGGCGCTCCCACGTGGGGTCTCTGCTCTCCGCCCACGACCTGCGC
TGCCCCACCGCCTTATCCGCCGCTATGTTTCGGACCGCAGCGGGAGTGTCCATTTCTACACGGACCCGGT
GAAGGCGGTGGAGGGCGTCAAGGATGGGTCGACCGTCATGCTCGGGGGCTTCGGGCTCTGCGGCATCCCC
GAGAACCTGATCGGTGCGCTGAAGACCAAGGGCGTGAAGGACCTGAAGATCGTCAGCAGCAACGTGGGCG
TGGACGACTTCGGCCTGGGCATCTTGCTGGCCTCCAAGCAGGTCAGGCGCGTGGTGTGCTCCTACCTGGG
GGAGAACGCGCTCTGCGAGAAGCTCTACCTGGCGGGCGAGCTGGAACTGGAGATGACGCCGCAGGGAACT
CTGGCCGAGCGCATCCGCGCGGGTGGCACTGGCGTGCCCGCCTTCTACACGCCCACAGGCTACGGAACGC
TGGTGCAGGAAGGGGGCTCTCCAATCCGGTACGCGCCCGATGGCCACCTGATTACTCTAAGTGAGCCGCG
AGAAGTACGCGAGTTTCAGGGCCGCTTCTACCTGCTAGAGCACGCTATCCGCGCTGACTTCGCACTGATC
AAGGGCTGGAAAGCCGACCGCTCGGGCAACGTGATCTTCAGAGGCAGCGCGCGCAACTTCAATGTGCCCA
TGTGCAAGGCCGCGGACATCTCGGTGGTAGAAGTGGAGGAGATCGTGGACGTTGGTACTTTCGCCCCGGA
AGACATCCACATCCCCAACATCTATGTGGACCGCGTGATCAAGGGGCCGAAGTTCGAGAAGCGCATCGAG
CGCCTAACCACACGTGACAGCAAGCCCGCGCCCGGGAGCAAAGACAATGACCCTTCCAGGACGCGCATCA
TCAAGCGCGCGGCTCTGGAGTTCCAGGACGGCATGTATGCCAATCTGGGCATCGGGATCCCTGTCTTGGC
GAGCAACTACATCAGCCCCAAGATGACCGTCTACCTGCACAGTGAAAACGGAATCCTGGGCTTGGGCCCG
TTCCCTTTGAAAAATGAGGTAGATGCCGACGTCATCAACGCAGGCAAGCAGACAGTGACGGTGGTTCCCG
GGGGCTGTTTCTTCGCCAGCGATGACTCTTTTGCCATGATTCGTGGCGGACACCTCCAACTGACCATGCT
TGGGGCCATGCAAGTTTCTCAATACGGCGACCTGGCCAACTGGATGGTGCCAGGCAAGAAGGTGAAGGGC
ATGGGTGGGGCCATGGACTTGGTGTCTAGTAAAAAGACCAGAGTGGTAGTCACCATGGAACACTGTACCA
AGACAAAGCAGCCCAAAATCTTGAAGAAATGCACCATGCCGTTGACTGGCAAGCGCTGCGTGGACCTCAT
CATCACTGAGAAGGCGGTGTTTGAAGTGAACCACTCAAAGGGGCTGACGCTGGTGGAGCTGTGGGAGGGC
TCGTCGGTAGATGACATCAAGGCCACCACAGCCTGTTCATTTGCTGTGTCCCCCAACCTCAAGCCCATGC
AGCAGATTAAACTTGATGCTTGA

Translation (520 aa):
MAALRLLAWALPRGVSALRPRPALPHRLIRRYVSDRSGSVHFYTDPVKAVEGVKDGSTVMLGGFGLCGIP
ENLIGALKTKGVKDLKIVSSNVGVDDFGLGILLASKQVRRVVCSYLGENALCEKLYLAGELELEMTPQGT
LAERIRAGGTGVPAFYTPTGYGTLVQEGGSPIRYAPDGHLITLSEPREVREFQGRFYLLEHAIRADFALI
KGWKADRSGNVIFRGSARNFNVPMCKAADISVVEVEEIVDVGTFAPEDIHIPNIYVDRVIKGPKFEKRIE
RLTTRDSKPAPGSKDNDPSRTRIIKRAALEFQDGMYANLGIGIPVLASNYISPKMTVYLHSENGILGLGP
FPLKNEVDADVINAGKQTVTVVPGGCFFASDDSFAMIRGGHLQLTMLGAMQVSQYGDLANWMVPGKKVKG
MGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKAVFEVNHSKGLTLVELWEG
SSVDDIKATTACSFAVSPNLKPMQQIKLDA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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