NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20715.1 Public Mus musculus 6 Etfbkmt 23 108 98 CCDS HistoryNCBI Gene:320204Re-query CCDS DB by CCDS ID:20715.1Re-query CCDS DB by GeneID:320204See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047531.15 ENSMUSP00000042102.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047531.15Link to Ensembl Protein Viewer:ENSMUSP00000042102.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000047531Re-query CCDS DB by Protein ID:ENSMUSP00000042102
Original member Current member EBI ENSMUST00000111551.1 ENSMUSP00000107176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111551.1Link to Ensembl Protein Viewer:ENSMUSP00000107176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111551Re-query CCDS DB by Protein ID:ENSMUSP00000107176
Original member Current member EBI ENSMUST00000179873.7 ENSMUSP00000136167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179873.7Link to Ensembl Protein Viewer:ENSMUSP00000136167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179873Re-query CCDS DB by Protein ID:ENSMUSP00000136167
Original member Current member NCBI NM_001252094.1 NP_001239023.1 Accepted alive Link to Nucleotide Sequence:NM_001252094.1Link to Protein Sequence:NP_001239023.1Re-query CCDS DB by Nucleotide ID:NM_001252094Re-query CCDS DB by Protein ID:NP_001239023Link to BLAST:NP_001239023.1
Original member Current member NCBI NM_001252095.1 NP_001239024.1 Accepted alive Link to Nucleotide Sequence:NM_001252095.1Link to Protein Sequence:NP_001239024.1Re-query CCDS DB by Nucleotide ID:NM_001252095Re-query CCDS DB by Protein ID:NP_001239024Link to BLAST:NP_001239024.1
Original member Current member NCBI NM_001252096.1 NP_001239025.1 Accepted alive Link to Nucleotide Sequence:NM_001252096.1Link to Protein Sequence:NP_001239025.1Re-query CCDS DB by Nucleotide ID:NM_001252096Re-query CCDS DB by Protein ID:NP_001239025Link to BLAST:NP_001239025.1
Original member Current member NCBI NM_177101.5 NP_796075.2 Accepted alive Link to Nucleotide Sequence:NM_177101.5Link to Protein Sequence:NP_796075.2Re-query CCDS DB by Nucleotide ID:NM_177101Re-query CCDS DB by Protein ID:NP_796075Link to BLAST:NP_796075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239023.1 255 Q80ZM3 255 100% 0 0
NP_001239024.1 255 Q80ZM3 255 100% 0 0
NP_001239025.1 255 Q80ZM3 255 100% 0 0
NP_796075.2 255 Q80ZM3 255 100% 0 0

Chromosomal Locations for CCDS 20715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149144150 149144442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149147158 149147288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149150342 149150685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCTTTCAGCCTGTGTTGGAAAGCTCCCAGGAGCCCATGGAGTTTCCTGCAGGCTGTGAACAATGGGT
CTCCCCTGTTTCTCTGGAGGACAGTGGGGAGCTGTTTGGATCCTAAGATGAAAGCCTACCTGGAAGAGAA
CACTGAAGTCACCAGCAGTGGTAGCCTTACCCCGGAAATCCAGTTACGGCTTTTAACCCCCAGGTGCAAG
TTTTGGTGGGAAAGGGCTGACCTGTGGCCCTACAGTGATCCCTACTGGGCTATTTACTGGCCAGGAGGCC
AGGCTCTGTCTAGGTATCTTTTGGATAACCCTGCTGTTGTTAGAGGAAAGTCTGTCTTAGATCTTGGGAG
TGGATGTGGAGCTACAGCCATTGCTGCCAAGATGAGTGGAGCATCAAAGATCTTGGCCAACGACATAGAC
CCCATTGCAGGAATGGCGATTACACTAAATTGCAAATTAAATGGACTGAATCCTTTTCCTGTTTTAACTA
AAAACATTTTGAATACCCAACAAGGTAAGTTTGATCTCATTGTTCTTGGAGATATGTTTTATGATGAAGA
CCTTGCAGACAGTCTTCATCTGTGGCTGCAGAACTACTTTTGGACCCATGGAACCCGAGTACTGATTGGT
GACCCTGGGAGGCCCCAGTTCAGTGGACATAGCATTCGGCATCAACTGTACCAACTAGTAGAATACACAC
TTCCAGAGCCAACTCAGCAAGAGAACAATGGACTGACCACAAGTGCTGTATGGGATTTTCATCCCTGA

Translation (255 aa):
MAFSLCWKAPRSPWSFLQAVNNGSPLFLWRTVGSCLDPKMKAYLEENTEVTSSGSLTPEIQLRLLTPRCK
FWWERADLWPYSDPYWAIYWPGGQALSRYLLDNPAVVRGKSVLDLGSGCGATAIAAKMSGASKILANDID
PIAGMAITLNCKLNGLNPFPVLTKNILNTQQGKFDLIVLGDMFYDEDLADSLHLWLQNYFWTHGTRVLIG
DPGRPQFSGHSIRHQLYQLVEYTLPEPTQQENNGLTTSAVWDFHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH