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Report for CCDS51032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51032.1 Public Mus musculus 3 Tafa3 23 108 98 CCDS HistoryNCBI Gene:329731Re-query CCDS DB by CCDS ID:51032.1Re-query CCDS DB by GeneID:329731See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139783.1 ENSMUSP00000123514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139783.1Link to Ensembl Protein Viewer:ENSMUSP00000123514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139783Re-query CCDS DB by Protein ID:ENSMUSP00000123514
Original member Current member NCBI NM_183224.3 NP_899047.1 Accepted alive Link to Nucleotide Sequence:NM_183224.3Link to Protein Sequence:NP_899047.1Re-query CCDS DB by Nucleotide ID:NM_183224Re-query CCDS DB by Protein ID:NP_899047Link to BLAST:NP_899047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899047.1 132 Q7TPG6 132 100% 0 0

Chromosomal Locations for CCDS 51032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104770734 104770745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104772180 104772304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104773040 104773189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104773821 104773932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGAGAGGCCCACCAGCAACTGGAGCGCAGGCAGCTGGGTGCTTGCACTGTGCCTCGCCTGGCTGTGGA
CGTGTCCGGCCTCTGCTTCCTTGCAGCCTCCAACATCCGCAGTCCTAGTGAAGCAGGGCACCTGCGAGGT
GATTGCTGCACATCGCTGCTGCAACCGGAACCGCATTGAGGAGCGCTCCCAGACGGTCAAATGCTCCTGC
CTGTCCGGCCAGGTGGCTGGCACCACCAGAGCAAAGCCCTCCTGCGTGGACGCCTCCATCGTCCTGCAGA
AGTGGTGGTGTCAGATGGAGCCCTGCCTGCTGGGAGAGGAGTGTAAGGTGCTCCCGGACCTGTCAGGGTG
GAGCTGCAGCAGTGGACACAAGGTCAAAACCACCAAGGTCACACGGTAA

Translation (132 aa):
MERPTSNWSAGSWVLALCLAWLWTCPASASLQPPTSAVLVKQGTCEVIAAHRCCNRNRIEERSQTVKCSC
LSGQVAGTTRAKPSCVDASIVLQKWWCQMEPCLLGEECKVLPDLSGWSCSSGHKVKTTKVTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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