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Report for CCDS24271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24271.1 Public Mus musculus 10 Pan2 23 108 98 CCDS HistoryNCBI Gene:103135Re-query CCDS DB by CCDS ID:24271.1Re-query CCDS DB by GeneID:103135See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005825.7 ENSMUSP00000005825.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005825.7Link to Ensembl Protein Viewer:ENSMUSP00000005825.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005825Re-query CCDS DB by Protein ID:ENSMUSP00000005825
Original member Current member NCBI NM_133992.3 NP_598753.1 Accepted alive Link to Nucleotide Sequence:NM_133992.3Link to Protein Sequence:NP_598753.1Re-query CCDS DB by Nucleotide ID:NM_133992Re-query CCDS DB by Protein ID:NP_598753Link to BLAST:NP_598753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598753.1 1200 Q8BGF7-1 1200 100% 0 0

Chromosomal Locations for CCDS 24271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128304212 128304493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128308065 128308234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128308336 128308456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128308604 128308681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128309037 128309304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128310171 128310513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128310704 128310800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128312878 128312994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128313141 128313260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128313615 128313743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128313842 128314041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128314183 128314316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128314448 128314554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128314726 128314824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128314923 128314993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128315098 128315236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128315487 128315657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128315776 128315835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128316431 128316521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128317634 128317791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128317890 128318033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128318163 128318342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128318945 128319038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128320248 128320445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128320734 128320765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3603 nt):
ATGAACTTTGAGGGTCTGGATCCTGGACTGGCCGAATTTTCCCCAGCTATGCATTCTACCCTGGACCCAG
TCCTGGATGCCCACCTGAATCCAAGTTTGCTACAGAATGTGGAGCTAGACCCAGAGGGAGTGGCCTTGGA
GGCTCTTCCTGTCCAGGAGTCAGTGCACATAATGGAAGGTGTCTACTCTGAGTTGCACAGCGTGGTGGCT
GAAGTGGGAGTGCCTGTGTCTGTCTCCCACTTTGATTTACATGAGGAGATGCTGTGGGTGGGGAGCCATG
GGGGCCATGCCACCTCCTTCTTCGGCCCAGCTCTGGAGCGCTACTCATCCTTTCAGGTCAATGGTGGTGA
CGACATTCGGCAAATCCAGAGCCTGGAGAACGGTATCCTCTTCCTCACCAAGAACAACCTCAAGTACATG
GCCCGTGGAGGGCTCATTATATTTGACTATTTGCTGGATGAAAACGAGGATATGCACAGCGTCCTCCTGA
CAGACAACAGCACTCTGCTCGTTGGGGGGCTGCAGAACCACGTACTGGAGATTGACCTGAACACTGTCCA
GGAGACTCAGAAGTATGCAGTCGAGACACCCGGAGTCACCATCATGAGACAGACAAATCGTTTCTTCTTC
TGTGGCCACACATCTGGCAAGGTTTCCCTGCGAGACCTCCGTAGTTTTAAAGTGGAGCATGAATTTGATG
CCTTCTCAGGGAGTCTGTCAGATTTTGATGTTCATGGCAACCTGCTGGCTGCCTGCGGCTTCTCCAGTCG
CCTTACCGGCCTGGCCTGTGACCGTTTCCTCAAAGTGTACGATCTGCGCATGATGCGTGCCATCACACCT
CTTCAAGTGCACGTGGATCCGGCCTTCTTACGATTCATCCCCACATACACTTCCCGCCTTGCTATCATCT
CCCAGTCAGGTCAATGCCAGTTTTGTGAACCCACAGGCCTGGCCAACCCAGCCGACATTTTCCATGTGAA
TCCCGTGGGACCTTTGCTAATGACGTTTGATGTGTCAGCCAGCAAGCAGGCCCTGGCCTTTGGGGATTCT
GAGGGCTGCGTGCATCTCTGGACTGATTCCCCTGAGCCGTCCTTCAACCCCTACTCCCGAGAGACTGAGT
TTGCCCTGCCCTGTCTTGTGGACTCCTTGCCGCCTCTGGACTGGAGCCAGGATCTGCTGCCGCTTTCCCT
CATTCCCGTCCCACTTACCACTGATGCACTGCTCTCTGACTGGCCTGCTGCCAACTCTGCTCCCGCTCCC
AGGCGAGCACCACCTGTGGATGCAGAAATTCTTCGAACCATGAAGAAAGTGGGCTTCATTGGCTATGCTC
CCAACCCTCGCACCAGGCTGCGCAACCAGATTCCCTATCGACTAAAGGAGTCAGACCATGAATTTGACAA
CTTCAGCCAAGTCACGGAGTCACCGACAGGGCGAGAAGAGGAGCCTCTCCACACAGTTTCTAAGAAATAC
CGGAAGGTAACCATCAAATATTCCAAGCTAGGCCTGGAAGACTTTGACTTCAAACACTACAATAAGACTC
TGTTTGCTGGGTTAGAGCCTCACATCCCCAATGCCTACTGTAACTGCATGATCCAGGTGCTCTATTTCTT
GGAGCCTGTTCGCTGTCTGATCCAGAACCACCTTTGCCAAAAGGAGTTCTGCCTAGCGTGCGAGCTCGGC
TTCCTCTTCCACATGCTAGACCTCTCTCGTGGCGATCCTTGTCAGGGCAGTAATTTCCTCCGAGCTTTCC
GGACCATCCCTGAGGCCTCAGCTCTGGGTCTCATCCTTGCTGACTCAGATGAGGCTTCAGGCAAGGGCAG
TCTGGCCCGGCTCATCCAGAGGTGGAACCGCTTCATCCTCACTCAGCTACATCAGGATATGCAGGAGCTG
GAAGTGCCCCAGGCTTATCGAGGTGCTGGAGGCAGTTTCTGCTCATCAGGAGACTCCATCATTGGGCAGC
TGTTCAGTTGTGAGATGGAGAACTGCAGTCTTTGCCGCTGCGGCAGCGAGACTGTGCGGGCCTCGTCCAC
CCTACTCTTCACACTCTCCTACCCTGAGGATAAAACCGGGAAGAACTATGACTTTGCTCAGGTGCTGAAG
CGAAGTATCTGCCTGGAGCAGAACACACAGGCCTGGTGTGACAACTGTGAGAAGTACCAGCCCACAATTC
AGACCAGAAACATCCGACATCTGCCAGATATTCTTGTCATTAACTGTGAAGTGAATAGCTCAAAAGAGGC
TGATTTCTGGAGACTGCAAGCTGAGGTTGCCTTCAAAATAGCGGTGAAAAAGTACGGCGGGGAAATGAAG
AGCAAAGAGTTTGCTTTAGCTGATCGGAAGGAACTGAGGAGTCCAGAGGGCTTTCTGTGTTCCTCCATCG
AGGAGCTGAAGAATGTCTGGCTTCCATTTTCCATCCGCATGAAGATGACCAAGAACAAAGGACTGGATGT
TTGCAACTGGGCTGACGAGCATGAGCTTAGCAGCCTGGGTGCCCCCTCACAGTGGGGTCCGGCCAGGGCA
GAGGAGGAGCTTGGTGTCTATGTATATGACCTGATGGCTACTGTGGTACACATCCTGGACTCACGAACAG
GCGGCAGCTTGGTGGCTCACATCAAAGTCGGTGAGACCTACCACCAGCGCAAGGAGGGCGTGACTCATCA
GCAGTGGTATCTCTTCAATGACTTCCTTATTGAACCTATTGATAAGTATGAAGCCGTGCAGTTTGACATG
AATTGGAAAGTACCTGCTATCCTGTATTATGTCAAAAGGAATCTCAATTCCAGATACAATCTGAATATCA
AGAACCCCATTGAGGCCAGTGTGCTGCTGGCAGAAGCCTCGCTGGCACGGAAGCAACGGAAAACACACAC
GACCTTTATTCCATTGATGCTGAATGAGATGCCACAGGTCGGGGACCTGGTGGGCCTGGATGCCGAGTTT
GTCACTCTTAATGAGGAAGAAGCAGAGTTACGCAGTGATGGTACCAAGTCCACCATTAAGCCAAGCCAGA
TGTCAGTAGCAAGGATCACCTGTGTTCGGGGCCAAGGGCCTAACGAGGGCATCCCCTTCATTGATGACTA
CATCTCCACGCAGGAGCAGGTAGTAGATTACTTGACTCAGTACTCGGGGATAAAGCCAGGAGACCTTGAT
GCCAAAATCTCCTCAAAGCACCTCACAACCCTCAAGTCTACCTACTTAAAGCTTCGCTTTCTCATTGATA
TTGGAGTCAAGTTTGTGGGTCATGGTCTGCAGAAGGACTTCCGGGTCATCAACCTCATGGTGCCCAAGGA
CCAAGTTCTTGACACAGTCTACCTGTTCCACATGCCCCGAAAACGAATGATTTCCCTACGATTCCTGGCC
TGGTATTTTCTAGACCTGAAGATTCAAGGTGAGACCCATGACAGCATTGAGGATGCCCGCACAGCCCTTC
AACTCTACCGGAAGTATCTGGAGCTGAGCAAGAACGGCACCGAGCCCGAGTCCTTCCACAAGGTGCTCAA
GGGTCTCTATGAGAAGGGCCGAAAGATGGACTGGAAGGTGCCTGAGCCTGAAAGCCAGACAAGTCCCAAG
AATGCAGCTGTCTTCTCAGTGCTGGCACTGTGA

Translation (1200 aa):
MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEGVYSELHSVVA
EVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGGDDIRQIQSLENGILFLTKNNLKYM
ARGGLIIFDYLLDENEDMHSVLLTDNSTLLVGGLQNHVLEIDLNTVQETQKYAVETPGVTIMRQTNRFFF
CGHTSGKVSLRDLRSFKVEHEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITP
LQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDS
EGCVHLWTDSPEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDALLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNFSQVTESPTGREEEPLHTVSKKY
RKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACELG
FLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEASGKGSLARLIQRWNRFILTQLHQDMQEL
EVPQAYRGAGGSFCSSGDSIIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPEDKTGKNYDFAQVLK
RSICLEQNTQAWCDNCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRLQAEVAFKIAVKKYGGEMK
SKEFALADRKELRSPEGFLCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWADEHELSSLGAPSQWGPARA
EEELGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKYEAVQFDM
NWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFIPLMLNEMPQVGDLVGLDAEF
VTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLD
AKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLA
WYFLDLKIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPESQTSPK
NAAVFSVLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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