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Report for CCDS28891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28891.1 Public Mus musculus 17 Sh3gl1 23 108 98 CCDS HistoryNCBI Gene:20405Re-query CCDS DB by CCDS ID:28891.1Re-query CCDS DB by GeneID:20405See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003268.10 ENSMUSP00000003268.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003268.10Link to Ensembl Protein Viewer:ENSMUSP00000003268.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000003268Re-query CCDS DB by Protein ID:ENSMUSP00000003268
Original member Current member NCBI NM_013664.3 NP_038692.1 Accepted alive Link to Nucleotide Sequence:NM_013664.3Link to Protein Sequence:NP_038692.1Re-query CCDS DB by Nucleotide ID:NM_013664Re-query CCDS DB by Protein ID:NP_038692Link to BLAST:NP_038692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038692.1 368 Q62419 368 100% 0 0

Chromosomal Locations for CCDS 28891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56017540 56017736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56017844 56017900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56017983 56018107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56018575 56018678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56018804 56018962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56019040 56019173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56019316 56019459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56019926 56019998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56020123 56020191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56036415 56036459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGTCGGTGGCGGGGCTGAAGAAGCAGTTCTACAAGGCGAGCCAGCTGGTCAGCGAGAAGGTTGGTGGGG
CCGAAGGGACCAAACTGGATGATGACTTTAAAGATATGGAAAAGAAGGTGGATGTCACCAGCAAGGCCGT
GGCAGAGGTGCTGGTCAGAACCATAGAATATCTGCAGCCTAACCCAGCCTCGAGAGCCAAGCTGACTATG
CTGAACACCGTATCCAAGATCCGGGGCCAAGTGAAGAACCCTGGCTACCCACAGTCAGAGGGTCTGTTGG
GAGAGTGCATGGTTCGCCATGGCAAGGAACTAGGTGGAGAGTCCAACTTCGGTGATGCCCTGCTAGATGC
AGGTGAGTCCATGAAGCGCCTGGCTGAGGTGAAGGACTCACTGGACATCGAGGTCAAGCAGAACTTCATT
GACCCACTACAGAACCTGTGTGACAAGGATCTGAAGGAGATCCAGCACCACCTGAAGAAATTGGAGGGCC
GCCGCCTTGACTTTGACTACAAGAAGAAGCGCCAGGGCAAGATCCCCGATGAGGAGCTGCGCCAGGCCCT
AGAGAAGTTCGAGGAGTCCAAGGAGGTGGCGGAGACCAGTATGCACAACCTCCTGGAGACTGATATAGAG
CAGGTGAGCCAGCTCTCGGCCCTGGTGGATGCCCAGCTGGACTACCACCGGCAGGCAGTGCAGATCCTGG
AGGAGCTGGCTGACAAGCTGAAGCGCAGGGTTCGGGAAGCCTCCTCACGCCCCAAGCGGGAGTTCAAGCC
CCGGCCCCGGGAGCCCTTTGAGCTTGGAGAGCTGGAGCAGCCCAATGGGGGATTCCCCTGTGCCCCAGCA
CCTAAGATCACAGCCTCCTCATCATTTAGATCGTCAGACAAGCCCATCAGGATGCCCAGCAAGAGCATGC
CACCCCTGGACCAGCCAAGCTGCAAGGCGCTTTATGATTTTGAGCCAGAGAATGATGGCGAGCTGGGCTT
CCGTGAGGGGGACCTCATCACGCTTACCAACCAGATCGACGAGAACTGGTATGAGGGGATGCTGCACGGC
CAATCAGGCTTCTTCCCACTCAGCTACGTGCAGGTGCTGGTGCCTCTGCCTCAGTGA

Translation (368 aa):
MSVAGLKKQFYKASQLVSEKVGGAEGTKLDDDFKDMEKKVDVTSKAVAEVLVRTIEYLQPNPASRAKLTM
LNTVSKIRGQVKNPGYPQSEGLLGECMVRHGKELGGESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFI
DPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFEESKEVAETSMHNLLETDIE
QVSQLSALVDAQLDYHRQAVQILEELADKLKRRVREASSRPKREFKPRPREPFELGELEQPNGGFPCAPA
PKITASSSFRSSDKPIRMPSKSMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHG
QSGFFPLSYVQVLVPLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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