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Report for CCDS28077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28077.1 Public Mus musculus 16 St6gal1 23 108 98 CCDS HistoryNCBI Gene:20440Re-query CCDS DB by CCDS ID:28077.1Re-query CCDS DB by GeneID:20440See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023601.13 ENSMUSP00000023601.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023601.13Link to Ensembl Protein Viewer:ENSMUSP00000023601.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023601Re-query CCDS DB by Protein ID:ENSMUSP00000023601
Original member Current member EBI ENSMUST00000115335.1 ENSMUSP00000110992.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115335.1Link to Ensembl Protein Viewer:ENSMUSP00000110992.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115335Re-query CCDS DB by Protein ID:ENSMUSP00000110992
Original member Current member EBI ENSMUST00000178797.7 ENSMUSP00000136206.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178797.7Link to Ensembl Protein Viewer:ENSMUSP00000136206.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178797Re-query CCDS DB by Protein ID:ENSMUSP00000136206
Original member Current member NCBI NM_001252505.1 NP_001239434.1 Accepted alive Link to Nucleotide Sequence:NM_001252505.1Link to Protein Sequence:NP_001239434.1Re-query CCDS DB by Nucleotide ID:NM_001252505Re-query CCDS DB by Protein ID:NP_001239434Link to BLAST:NP_001239434.1
Original member Current member NCBI NM_001252506.1 NP_001239435.1 Accepted alive Link to Nucleotide Sequence:NM_001252506.1Link to Protein Sequence:NP_001239435.1Re-query CCDS DB by Nucleotide ID:NM_001252506Re-query CCDS DB by Protein ID:NP_001239435Link to BLAST:NP_001239435.1
Original member Current member NCBI NM_145933.4 NP_666045.1 Accepted alive Link to Nucleotide Sequence:NM_145933.4Link to Protein Sequence:NP_666045.1Re-query CCDS DB by Nucleotide ID:NM_145933Re-query CCDS DB by Protein ID:NP_666045Link to BLAST:NP_666045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239434.1 403 Q64685 403 100% 0 0
NP_001239435.1 403 Q64685 403 100% 0 0
NP_666045.1 403 Q64685 403 100% 0 0

Chromosomal Locations for CCDS 28077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23321081 23321678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23328342 23328439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23354866 23354964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23356209 23356383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23357629 23357870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGATTCATACCAACTTGAAGAGAAAGTTCAGCTGCTTTGTCCTGGTCTTTCTCCTGTTTGCCATCATCT
GCGTGTGGAAGAAAGGGAGCGACTATGAGGCTCTTACATTGCAAGCCAAGGTATTCCAGATGCCGAAGAG
CCAGGAGAAAGTGGCCGTGGGGCCTGCTCCCCAGGCTGTGTTCTCAAACAGCAAACAAGACCCTAAGGAA
GGCGTTCAGATCCTCAGTTACCCCAGGGTCACAGCCAAGGTCAAGCCACAGCCCTCCTTGCAGGTGTGGG
ACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGGAACTATCTGAACATGAA
TAAATATAAAGTGTCCTACAAGGGGCCGGGACCAGGAGTCAAGTTCAGCGTAGAGGCGCTGCGCTGCCAC
CTTCGAGACCACGTGAATGTGTCTATGATAGAGGCCACAGATTTTCCCTTCAACACCACTGAATGGGAGG
GTTACCTGCCCAAGGAGAACTTCAGAACCAAGGCTGGGCCTTGGCATAAGTGTGCCGTCGTGTCTTCTGC
AGGATCTCTGAAGAACTCCCAGCTGGGTCGAGAGATTGATAATCATGATGCGGTCCTGAGGTTTAATGGG
GCACCTACAGACAACTTCCAACAGGATGTGGGCACAAAAACTACCATCCGCCTAGTGAACTCTCAGTTAG
TCACCACAGAAAAGCGCTTCCTGAAGGACAGTTTGTACACCGAAGGAATCCTGATTCTGTGGGACCCATC
TGTGTATCATGCAGACATTCCGCAGTGGTATCAGAAGCCAGACTACAACTTCTTCGAAACCTATAAGAGT
TACCGAAGGCTTCACCCCAGCCAGCCTTTTTACATCCTCAAGCCCCAGATGCCATGGGAACTATGGGACA
TCATTCAGGAAATCTCTCCAGATCTGATTCAGCCGAATCCCCCATCCTCCGGCATGCTGGGTATCATCAT
TATGATGACGCTGTGTGACCAAGTTGATATTTACGAGTTCCTCCCATCCAAGCGCAAGACAGATGTGTGC
TACTATCACCAGAAGTTCTTTGACAGCGCCTGCACGATGGGTGCCTACCATCCGCTCCTCTTCGAGAAGA
ATATGGTGAAGCATCTCAATGAGGGAACAGATGAAGACATTTATTTGTTTGGGAAAGCTACCCTGTCTGG
CTTCCGGAACAATCGCTGTTGA

Translation (403 aa):
MIHTNLKRKFSCFVLVFLLFAIICVWKKGSDYEALTLQAKVFQMPKSQEKVAVGPAPQAVFSNSKQDPKE
GVQILSYPRVTAKVKPQPSLQVWDKDSTYSKLNPRLLKIWRNYLNMNKYKVSYKGPGPGVKFSVEALRCH
LRDHVNVSMIEATDFPFNTTEWEGYLPKENFRTKAGPWHKCAVVSSAGSLKNSQLGREIDNHDAVLRFNG
APTDNFQQDVGTKTTIRLVNSQLVTTEKRFLKDSLYTEGILILWDPSVYHADIPQWYQKPDYNFFETYKS
YRRLHPSQPFYILKPQMPWELWDIIQEISPDLIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVC
YYHQKFFDSACTMGAYHPLLFEKNMVKHLNEGTDEDIYLFGKATLSGFRNNRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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