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Report for CCDS35930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35930.1 Public Mus musculus 10 Rhobtb1 23 108 98 CCDS HistoryNCBI Gene:69288Re-query CCDS DB by CCDS ID:35930.1Re-query CCDS DB by GeneID:69288See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020101.11 ENSMUSP00000020101.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020101.11Link to Ensembl Protein Viewer:ENSMUSP00000020101.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020101Re-query CCDS DB by Protein ID:ENSMUSP00000020101
Original member Current member EBI ENSMUST00000067908.13 ENSMUSP00000065095.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067908.13Link to Ensembl Protein Viewer:ENSMUSP00000065095.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067908Re-query CCDS DB by Protein ID:ENSMUSP00000065095
Original member Current member EBI ENSMUST00000164034.7 ENSMUSP00000132068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164034.7Link to Ensembl Protein Viewer:ENSMUSP00000132068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164034Re-query CCDS DB by Protein ID:ENSMUSP00000132068
Original member Current member NCBI NM_001081347.1 NP_001074816.1 Accepted alive Link to Nucleotide Sequence:NM_001081347.1Link to Protein Sequence:NP_001074816.1Re-query CCDS DB by Nucleotide ID:NM_001081347Re-query CCDS DB by Protein ID:NP_001074816Link to BLAST:NP_001074816.1
Original member Current member NCBI NM_001252636.1 NP_001239565.1 Accepted alive Link to Nucleotide Sequence:NM_001252636.1Link to Protein Sequence:NP_001239565.1Re-query CCDS DB by Nucleotide ID:NM_001252636Re-query CCDS DB by Protein ID:NP_001239565Link to BLAST:NP_001239565.1
Original member Current member NCBI NM_001252637.1 NP_001239566.1 Accepted alive Link to Nucleotide Sequence:NM_001252637.1Link to Protein Sequence:NP_001239566.1Re-query CCDS DB by Nucleotide ID:NM_001252637Re-query CCDS DB by Protein ID:NP_001239566Link to BLAST:NP_001239566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074816.1 695 Q9DAK3 695 100% 0 0
NP_001239565.1 695 Q9DAK3 695 100% 0 0
NP_001239566.1 695 Q9DAK3 695 100% 0 0

Chromosomal Locations for CCDS 35930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 69248781 69248972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69249625 69249728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69266187 69266372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69269903 69270873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69272739 69272857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69279345 69279495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69285687 69285775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69288950 69289055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69289520 69289689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGACTCTGACATGGACTACGAACGACCCAACGTTGAGACCATCAAGTGCGTGGTCGTGGGCGACAACG
CCGTAGGGAAGACGCGCCTCATCTGTGCCCGGGCCTGCAACACCACCCTGACACAGTACCAGCTGCTGGC
CACCCATGTGCCCACCGTGTGGGCCATTGATCAGTACCGTGTCTGCCAGGAGGTCCTGGAGCGGTCCAGG
GATGTCGTCGATGAAGTGAGCATCTCCCTCAGGCTTTGGGACACGTTTGGAGATCACCACAAAGACAGGC
GGTTCGCATATGGCAGGTCCGATGTTGTGGTCCTCTGCTTTAGCATCGCGAACCCCAACTCCCTAAATCA
TGTGAAAACCATGTGGTATCAAGAAATCAAGCACTTTTGCCCTCGAACGCCCGTCGTCCTGGTTGGCTGC
CAGCTAGACCTCCGCTACGCCGACCTGGAGGCTGTTAACCGGGCCAGACGCCCCTTAGCAAGGCCCATAA
AGAGAGGTGACATTTTGCCCCCAGAAAAAGGCCGCGAGGTGGCGAAGGAACTTGGCATCCCGTACTACGA
GACCAGCGTGTTTGACCAGTTTGGCATCAAGGACGTGTTCGACAATGCCATCCGAGCAGCCCTCATCTCC
CGCCGGCACCTGCAGTTCTGGAAATCCCACTTGAAAAAAGTCCAGAAGCCTCTGCTTCAGGCGCCCTTCC
TACCTCCGAAAGCTCCTCCCCCGGTCATCAAGGTCCCCGAGTGTCCGTCTGCGGGGACCAGCGATGCTGC
CTGTTTACTGGACAACCCCCTGTGCGCCGACGTCCTCTTCGTTCTCCATGACGAGGAGCACATCTTTGCG
CACCGCATTTACCTCGCTACCTCTTCTTCCAAATTCTACGACCTTTTTTTAATGGAGTGTGAAGAATCCC
CTTGTTGGGGTGGAGGAGCTGGTGAGGAGGTGCCGTGCAGGGATTTTCAGGGGCGGACGCAGAGTCTTGG
ATCAGCCGAGGAAGGGAAGGAGGGCCCCCAGAGGACCCCTCAGGCTGACCCAGGAGCGTCTTCAGGCCAG
GACCTGCCTGAGAGTTTGGCTTTGCAGATGGAAGCCTCGGGTTCCGAGGGACACGCCCTGTCCGGCTGGA
GCAAGGGGTTTGTCAGCATGCACAGGGAGGTGCGGGTCAACCCCATTTCCAAGCGGGTGGGCCCAGTGAC
CGTGGTCAGGCTGGACCCATCGATGCAGTCAGGCCCTTTCCGGACCCTGCTGAGATTCCTCTACTCTGGG
CAGCTGGACGAAAAGGAAAAAGATCTGCTGGGGCTGGCTCAGATGGCCGAGGTCCTGGAGATGTTTGATC
TGAGGATGATGGTAGAGAATATCATGAACAAGGAGGCTTTTATGAACCAGGAGATCACGAAAGCCTTCCA
CGTCCGGAAAGCCAATCGGATCAAAGAATGTCTCAGCAAGGGCACCTTCTCAGACGTGACATTTACCTTG
GATGACGGAGCCATCAGCGCCCACAAGCCGCTGCTGATCTGTAGCTGCGAATGGATGGCGGCCATGTTCG
GGGGTTCCTTTGTGGAAAGCGCCAACCGTGAGGTTCACCTCCCAAATATAAACAAGATGTCGATGCAGGC
GGTGTTGGAATACCTCTACACCAAGCAGTTGTCACCCAACTTGGACCTGGACCCCCTGGAGTTAATTGCC
TTGGCAAACAGATTTTGCCTGACACACTTGGTTGCTCTCGTAGAGCAGCATGCTGTCCAGGAGCTCACCA
AGGCCGCTGTCAGTGGTGTGAGCATCGATGGTGAAGTTCTCTCCTACTTGGAGCTGGCACAGTTTCACAA
TGCCAATCAGCTAGCTGCCTGGTGTTTGCATCACATCTGCACCAACTACAACAGCGTCTGTTCCAAGTTC
CGCAAGGAAATCAAATCCAAGTCAGCAGACAACCAGGAGTACTTTGAGCGGCACCGCTGGCCCCCTGTGT
GGTACCTGAAGGAGGAAGACCACTACCAGCGTGTGAAGAGGGAACGAGAGAAAGAGGACCTGGCGCTGAA
CAAGCACCATTCAAGGAGAAAGTGGTGTTTCTGGCATTCGTCCCCAGCTGTCGCCTGA

Translation (695 aa):
MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSR
DVVDEVSISLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVVLVGC
QLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGIPYYETSVFDQFGIKDVFDNAIRAALIS
RRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKVPECPSAGTSDAACLLDNPLCADVLFVLHDEEHIFA
HRIYLATSSSKFYDLFLMECEESPCWGGGAGEEVPCRDFQGRTQSLGSAEEGKEGPQRTPQADPGASSGQ
DLPESLALQMEASGSEGHALSGWSKGFVSMHREVRVNPISKRVGPVTVVRLDPSMQSGPFRTLLRFLYSG
QLDEKEKDLLGLAQMAEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRIKECLSKGTFSDVTFTL
DDGAISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLEYLYTKQLSPNLDLDPLELIA
LANRFCLTHLVALVEQHAVQELTKAAVSGVSIDGEVLSYLELAQFHNANQLAAWCLHHICTNYNSVCSKF
RKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDLALNKHHSRRKWCFWHSSPAVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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