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Report for CCDS24727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24727.1 Public Mus musculus 11 Zfp672 23 108 98 CCDS HistoryNCBI Gene:319475Re-query CCDS DB by CCDS ID:24727.1Re-query CCDS DB by GeneID:319475See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057836.11 ENSMUSP00000060088.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057836.11Link to Ensembl Protein Viewer:ENSMUSP00000060088.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057836Re-query CCDS DB by Protein ID:ENSMUSP00000060088
Original member Current member EBI ENSMUST00000064786.11 ENSMUSP00000070567.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064786.11Link to Ensembl Protein Viewer:ENSMUSP00000070567.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064786Re-query CCDS DB by Protein ID:ENSMUSP00000070567
Original member Current member EBI ENSMUST00000108829.7 ENSMUSP00000104457.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108829.7Link to Ensembl Protein Viewer:ENSMUSP00000104457.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108829Re-query CCDS DB by Protein ID:ENSMUSP00000104457
Original member Current member NCBI NM_001256516.1 NP_001243445.1 Accepted alive Link to Nucleotide Sequence:NM_001256516.1Link to Protein Sequence:NP_001243445.1Re-query CCDS DB by Nucleotide ID:NM_001256516Re-query CCDS DB by Protein ID:NP_001243445Link to BLAST:NP_001243445.1
Original member Current member NCBI NM_001256517.1 NP_001243446.1 Accepted alive Link to Nucleotide Sequence:NM_001256517.1Link to Protein Sequence:NP_001243446.1Re-query CCDS DB by Nucleotide ID:NM_001256517Re-query CCDS DB by Protein ID:NP_001243446Link to BLAST:NP_001243446.1
Original member Current member NCBI NM_001256518.1 NP_001243447.1 Accepted alive Link to Nucleotide Sequence:NM_001256518.1Link to Protein Sequence:NP_001243447.1Re-query CCDS DB by Nucleotide ID:NM_001256518Re-query CCDS DB by Protein ID:NP_001243447Link to BLAST:NP_001243447.1
Original member Current member NCBI NM_001256519.1 NP_001243448.1 Accepted alive Link to Nucleotide Sequence:NM_001256519.1Link to Protein Sequence:NP_001243448.1Re-query CCDS DB by Nucleotide ID:NM_001256519Re-query CCDS DB by Protein ID:NP_001243448Link to BLAST:NP_001243448.1
Original member Current member NCBI NM_001256520.1 NP_001243449.1 Accepted alive Link to Nucleotide Sequence:NM_001256520.1Link to Protein Sequence:NP_001243449.1Re-query CCDS DB by Nucleotide ID:NM_001256520Re-query CCDS DB by Protein ID:NP_001243449Link to BLAST:NP_001243449.1
Original member Current member NCBI NM_178761.5 NP_848876.2 Accepted alive Link to Nucleotide Sequence:NM_178761.5Link to Protein Sequence:NP_848876.2Re-query CCDS DB by Nucleotide ID:NM_178761Re-query CCDS DB by Protein ID:NP_848876Link to BLAST:NP_848876.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243445.1 468 Q99LH4 468 100% 0 0
NP_001243446.1 468 Q99LH4 468 100% 0 0
NP_001243447.1 468 Q99LH4 468 100% 0 0
NP_001243448.1 468 Q99LH4 468 100% 0 0
NP_001243449.1 468 Q99LH4 468 100% 0 0
NP_848876.2 468 Q99LH4 468 100% 0 0

Chromosomal Locations for CCDS 24727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58316087 58317493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGTTCACAGCACCTGGTATGGCTACGACCCAGGAAAGACCTTATTCCTGCAGTGTGTGTGGCAAGAGCT
TTCAGTATAGTGCAGTGCTGCTGCGGCACGAACGGGCCCATGGTGGCGACAAGCGTTTCTGCTGTCTAGA
GTGTGGTGAACGCTGTGCTCGAGCAGCAGACCTACGTGCACACAGGTGGACCCATGCTGGCCAGACCCTC
TATATCTGCAGCGAGTGTGGCCAGAGTTTCAGTCACAGTGGCCTGCTGGATCTACACCTGGGAACGCACC
GAAGGCGCAGCCGCACCCGTCCTTGCCGCCTCTGTGGCCGTCGCTTCCCTCATGTCCCTGCGCTGCTGCT
GCATCGTGCTCGCCAGCACCCACCTGAGAAGCCCCACCGCTGCCCTCTGTGTGCCCGCTCTTTTCGGCAG
AGCGCTCTTCCTTTCCACCTGGCACGAGCACACCCCCCTGAGATCATCACTGTCACCGCCCCTTCCCCCA
GCACGCTCTACCACTGTACACAGTGCCCACGGGCCTTCCATAGCAGTGCTGGGCTGCGGAACCATTCCCG
CATCCATGTGGTCCCCAGCCTCAGTGACCCTGGCACTGAGGCCCATCTATGTGGCATATGTGGTAAGAGC
TTCAGCAAGAGTTCCACACTCACACGACACCTCCAGAGGCACTCTGGGGAAAAGCCTTTCAAGTGCCCTG
AGTGTGGCAAGGGCTTCTTGGAGAGTGCCACACTTGTGCGGCACCAGCGAACACACACTGGGGAGAAGCC
ATATGCATGTAGCGACTGTGGACGCTGTTTCAGCGAGAGCTCCACACTGCTGCGTCACCAGCGCAGCCAT
CAGGGTGAAAGGCCGCACGTGTGTGCCACTTGTGGCAAGGGCTTTGGGCAGCGGTATGATCTAGTAGTGC
ACCAGCGTAGCCACACAGGGGAGAGGCCCTTCCCATGCCCGCAGTGTGGCCGGGGCTTCACAGACCGCTC
CGACCTCACCAAACACCTGCGCACACACACAGGGGAAAAGCCCTACCACTGTGAGTTGTGTGGCAAGCGA
TTCACCTGCATTTCCAACCTCAATGTACATTTGCGCAACCATGCAGGCCATAAACCACACAAGTGCCCAG
AGTGCGGCAAGTCCTTTAGTGTTGCCTCCAAGCTTGCACTGCACAGAAAGACACACCTAGGTGAGCGGAC
AGCAGAGTGCACAGAGTGTGGCAAATTCTTTAGCCATGGCCGGTCGCTATCACAGCACCAGCGGTCCCAC
AGAAGGGCTCGAGCAGCTGCAATGGCAGCCACTACCACCACCACTGTAGTCACTGAGGTGACAATAGGTC
CTTCTCTCACTCTCACAGGACCAACAGAACAGGAGAAATCAGGGCTCTTAGTATCCCCATTTCAGGAAAC
TTGCTAA

Translation (468 aa):
MFTAPGMATTQERPYSCSVCGKSFQYSAVLLRHERAHGGDKRFCCLECGERCARAADLRAHRWTHAGQTL
YICSECGQSFSHSGLLDLHLGTHRRRSRTRPCRLCGRRFPHVPALLLHRARQHPPEKPHRCPLCARSFRQ
SALPFHLARAHPPEIITVTAPSPSTLYHCTQCPRAFHSSAGLRNHSRIHVVPSLSDPGTEAHLCGICGKS
FSKSSTLTRHLQRHSGEKPFKCPECGKGFLESATLVRHQRTHTGEKPYACSDCGRCFSESSTLLRHQRSH
QGERPHVCATCGKGFGQRYDLVVHQRSHTGERPFPCPQCGRGFTDRSDLTKHLRTHTGEKPYHCELCGKR
FTCISNLNVHLRNHAGHKPHKCPECGKSFSVASKLALHRKTHLGERTAECTECGKFFSHGRSLSQHQRSH
RRARAAAMAATTTTTVVTEVTIGPSLTLTGPTEQEKSGLLVSPFQETC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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