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Report for CCDS3682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3682.1 Public Homo sapiens 4 ETNPPL 24 110 108 CCDS HistoryNCBI Gene:64850Re-query CCDS DB by CCDS ID:3682.1Re-query CCDS DB by GeneID:64850See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296486.8 ENSP00000296486.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296486.8Link to Ensembl Protein Viewer:ENSP00000296486.3Re-query CCDS DB by Nucleotide ID:ENST00000296486Re-query CCDS DB by Protein ID:ENSP00000296486
Original member Current member NCBI NM_031279.4 NP_112569.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031279.4Link to Protein Sequence:NP_112569.2Re-query CCDS DB by Nucleotide ID:NM_031279Re-query CCDS DB by Protein ID:NP_112569Link to BLAST:NP_112569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112569.2 499 Q8TBG4-1 499 100% 0 0

Chromosomal Locations for CCDS 3682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108742484 108742612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108743789 108743856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108746399 108746529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108746762 108746851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108748005 108748159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108749238 108749463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108750936 108751018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108752895 108753011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108754620 108754710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108756418 108756492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108759749 108759908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108760188 108760306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108762843 108762898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTGCGAGCTGTACAGTAAGCGGGACACTCTGGGGCTGAGGAAGAAGCACATCGGGCCCTCATGCAAAG
TTTTCTTTGCATCGGATCCCATCAAAATAGTGAGAGCCCAGAGGCAGTACATGTTTGATGAGAACGGTGA
ACAGTACTTGGACTGCATCAACAATGTTGCCCATGTGGGACACTGTCACCCAGGAGTGGTCAAAGCTGCC
CTGAAACAGATGGAACTGCTAAATACAAATTCTCGATTCCTCCACGACAACATTGTTGAGTATGCCAAAC
GCCTTTCAGCAACTCTGCCGGAGAAACTCTCTGTTTGTTATTTTACAAATTCAGGATCCGAAGCCAACGA
CTTAGCCTTACGCCTGGCTCGGCAGTTCAGAGGCCACCAGGATGTGATCACTCTTGACCATGCTTACCAT
GGTCACCTATCATCCTTAATTGAGATTAGCCCATATAAGTTTCAGAAAGGAAAAGATGTCAAAAAAGAAT
TTGTACATGTGGCACCAACTCCAGATACTTACAGAGGAAAATATAGAGAAGACCATGCAGACTCAGCCAG
TGCTTATGCAGATGAAGTGAAGAAAATCATTGAAGATGCTCATAACAGTGGAAGGAAGATTGCTGCCTTT
ATTGCTGAATCCATGCAGAGTTGTGGCGGACAAATAATTCCTCCAGCAGGCTACTTCCAGAAAGTGGCAG
AATATGTACACGGTGCAGGGGGTGTGTTTATAGCTGATGAAGTTCAAGTGGGCTTTGGCAGAGTTGGGAA
ACATTTCTGGAGCTTCCAGATGTATGGTGAAGACTTTGTTCCAGACATCGTCACAATGGGAAAACCGATG
GGCAACGGCCACCCGGTGGCATGTGTGGTAACAACCAAAGAAATTGCAGAAGCCTTCAGCAGCTCTGGGA
TGGAATATTTTAATACGTATGGAGGAAATCCAGTATCTTGTGCTGTTGGTTTGGCTGTCCTGGATATAAT
TGAAAATGAAGACCTTCAAGGAAATGCCAAGAGAGTAGGGAATTATCTCACTGAGTTACTGAAAAAACAG
AAGGCTAAACACACTTTGATAGGAGATATTAGGGGCATTGGCCTTTTTATTGGAATTGATTTAGTGAAGG
ACCATCTGAAAAGGACCCCTGCCACAGCTGAAGCTCAGCACATCATCTACAAGATGAAAGAAAAACGAGT
GCTTCTCAGTGCCGATGGACCTCATAGAAATGTACTTAAAATAAAACCACCTATGTGCTTCACTGAAGAA
GATGCAAAGTTCATGGTGGACCAACTTGATAGGATTCTAACAGTTTTAGAAGAAGCTATGGGAACCAAAA
CCGAAAGTGTGACCTCTGAGAATACTCCATGCAAAACAAAGATGCTGAAAGAAGCCCACATAGAACTGCT
TAGGGACAGCACCACTGACTCCAAAGAAAATCCCAGCAGAAAGAGAAATGGAATGTGCACGGATACACAT
TCACTGCTCAGTAAGAGGCTCAAGACATGA

Translation (499 aa):
MCELYSKRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHVGHCHPGVVKAA
LKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYH
GHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAF
IAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPM
GNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQ
KAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEE
DAKFMVDQLDRILTVLEEAMGTKTESVTSENTPCKTKMLKEAHIELLRDSTTDSKENPSRKRNGMCTDTH
SLLSKRLKT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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