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Report for CCDS19896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19896.1 Public Mus musculus 6 Casd1 23 108 98 CCDS HistoryNCBI Gene:213819Re-query CCDS DB by CCDS ID:19896.1Re-query CCDS DB by GeneID:213819See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015333.11 ENSMUSP00000015333.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015333.11Link to Ensembl Protein Viewer:ENSMUSP00000015333.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000015333Re-query CCDS DB by Protein ID:ENSMUSP00000015333
Original member NCBI NM_145398.3 NP_663373.2 Updated not alive Link to Nucleotide Sequence:NM_145398.3Link to Protein Sequence:NP_663373.2Re-query CCDS DB by Nucleotide ID:NM_145398Re-query CCDS DB by Protein ID:NP_663373
Current member NCBI NM_145398.4 NP_663373.2 Accepted alive Link to Nucleotide Sequence:NM_145398.4Link to Protein Sequence:NP_663373.2Re-query CCDS DB by Nucleotide ID:NM_145398Re-query CCDS DB by Protein ID:NP_663373Link to BLAST:NP_663373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663373.2 797 Q7TN73 797 100% 0 0

Chromosomal Locations for CCDS 19896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4601169 4601301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4607983 4608079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4608634 4608754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4613235 4613279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4614649 4614711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4619289 4619333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4619761 4619884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4621072 4621286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4624052 4624474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4625466 4625555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4629962 4630081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4631008 4631164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4631519 4631598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4634002 4634103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4635746 4635886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4636969 4637046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4640915 4641007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4641852 4642118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGCGGCTCTGGCCTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCGCCAAGG
TGCTGGCGCTGGTGGCCGTGCTGCTGCTCGCAGCGTGCCACCTCGCGTCCCGCCGCTACCGAGGCAATGA
TTCGTGTGAATACCTTCTCTCGAGCGGCAGATTTCTTGGAGAAAAAGTTTGGCAACCTCACAGTTGTATG
ATGCATAAATACAAAATAAGTGAAGCAAAGACTTGCCTTGTAGATAAACACATTGCGTTTATTGGAGATT
CCAGGATCCGTCAATTATTTTATTCTTTTGTAAAAATCATTAACCCCCAGTTTAAAGAAGAAGGAAATAA
GCATGAAAACATTCCTTTTGAAGACAAGGCTGCATCAGTTAAAGTGGATTTTCTTTGGCATCCAGAAGTT
AATGGTTCCATGAAACAATGTATCAAGGTGTGGACTGAGGACTCGGTTTTGAAGCCCCATGTGATTGTAG
CAGGAGCAGCCACATGGTCCATCAAGATTCATAATGGCAGCGAGGAGGCACTAGCTCAGTATAAAATGAA
TATCACCTCCATAGCACCACTCTTAGAAAAATTGGCCAAGACTAGTGATGTTTATTGGGTCTTACAAGAC
CCAGTTTATGAGGATCTCTTAAGTGAAAATAGGAAAATGATTACCAATGAGAAGATAGACGCCTACAATG
AGGCTGCAGTCAGCATCCTGAACAGCAGCACCAGGACCTCTAAGTCCAATGTGAAGATGTTCAGTGTTTC
CAAACTCATTGCCCAAGAGACCATCATGGAGTCTCTGGATGGCTTACACCTTCCTGAATCGAGCAGAGAA
ACTAGTGCAATGATTCTCATGAACGTGTACTGCAATAAAGTTGTGAAGCCTGTGGATGGTTCCTGTTGTC
AGCCTCGGCCACCTCTCACTCTCATTCAGAAGCTAGCTGCTTGCTTTTTCACTTTATCCATTATTGGGTA
TTTCATTTTCTATGTAATTCATCGTAATGCTCACCGGAAGAATAAACCATGTACTGATTTGGAGAGTGGC
GAGGAAAAGAAGAATATTATCAATACTCCTGTGTCTTCATTAGAAATACTTTTACAGTCTTTTTGCAAAC
TTGGCCTGATTATGGCTTATTTCTATATGTGTGACCGTGCAAACCTGTTTATGAAGGAAAACAAATTTTA
TACACATTCATCATTCTTTATTCCAATTATCTACATCTTGGTTTTGGGAGTATTTTACAATGAAAACACA
AAAGAGACTAAAGTGTTAAATAGAGAGCAAACTGATGAATGGAAAGGCTGGATGCAGCTTGTGATTTTGA
TCTATCACATCTCGGGAGCAAGCACATTTCTGCCTGTGTACATGCACATTCGAGTTCTGGTGGCTGCATA
TCTGTTTCAGACAGGGTACGGGCATTTCTCTTACTTTTGGATCAAAGGAGATTTTGGGATTCATAGAGTG
TGTCAGGTCTTATTTCGTCTCAATTTCCTGGTTGTGGTGTTATGTATCGTAATGGATCGACCATATCAGT
TCTATTACTTTGTCCCCTTGGTTACCGTGTGGTTCATGGTCATATATGTCACTTTAGCACTGTGGCCACA
AATAACCCAAAAGAAGGCAAATGGAAATTTTTTCTGGTATCTCGGCTTACTGTTGAAACTAGGCTTGCTG
CTGCTGTGCATATGGTTCTTGGCATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTATGGCCACTTT
CCAAATGTTTTGAACTAGAAGGGAGCGTGTATGAATGGTGGTTCAGGTGGAGGCTAGACCGCTACGTTGT
CTTCCATGGGGTTCTGTTTGCTTTCATTTATCTGGCTTTGCAGAGACGGCAAATACTTTCTGAAGGAAAG
GGTGAACCACTCTTTTCAAACAAAATTTCCAACTTTCTATTGTTTGTTTCAGTAGTGTCTTTCTTGACCT
ATTCCATCTGGGCTAGCAGCTGTAAGAACAAAGCAGAGTGTAACGAACTCCACCCATCTGTGTCTGTGGT
ACAGATTGTAGCCTTCATCCTGATAAGGAACATACCTGGATATGCCCGTTCTATATACAGTTCTTTTTTT
GCTTGGTTTGGAAAAATTTCACTAGAGCTGTTCATCTGCCAGTACCACATCTGGCTGGCAGCAGACACAA
GGGGCATCCTGGTCCTCATCCCTGGAAACCCGACACTCAACATCATCGTCAGCACGTTCATCTTCGTTTG
TGTGGCACATGAGATTTCTCAGATCACCACTGACCTCGCGCAGGTCGTTATTCCTAAAGATAACCCGTCT
CTCTTCCGAAGGCTGGCATGTACGATTGCATTCTTTGGTGGAGTCCTCATCTTATCCTCCATTCAAGATA
AATCAAGACTGTAG

Translation (797 aa):
MAALAYNLGKREINHYFSVRSAKVLALVAVLLLAACHLASRRYRGNDSCEYLLSSGRFLGEKVWQPHSCM
MHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIPFEDKAASVKVDFLWHPEV
NGSMKQCIKVWTEDSVLKPHVIVAGAATWSIKIHNGSEEALAQYKMNITSIAPLLEKLAKTSDVYWVLQD
PVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRTSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRE
TSAMILMNVYCNKVVKPVDGSCCQPRPPLTLIQKLAACFFTLSIIGYFIFYVIHRNAHRKNKPCTDLESG
EEKKNIINTPVSSLEILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENT
KETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFWIKGDFGIHRV
CQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQITQKKANGNFFWYLGLLLKLGLL
LLCIWFLAYSQGAFEKIFSLWPLSKCFELEGSVYEWWFRWRLDRYVVFHGVLFAFIYLALQRRQILSEGK
GEPLFSNKISNFLLFVSVVSFLTYSIWASSCKNKAECNELHPSVSVVQIVAFILIRNIPGYARSIYSSFF
AWFGKISLELFICQYHIWLAADTRGILVLIPGNPTLNIIVSTFIFVCVAHEISQITTDLAQVVIPKDNPS
LFRRLACTIAFFGGVLILSSIQDKSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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