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Report for CCDS25076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25076.1 Public Mus musculus 11 Ssh2 23 108 98 CCDS HistoryNCBI Gene:237860Re-query CCDS DB by CCDS ID:25076.1Re-query CCDS DB by GeneID:237860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037912.11 ENSMUSP00000042625.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037912.11Link to Ensembl Protein Viewer:ENSMUSP00000042625.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037912Re-query CCDS DB by Protein ID:ENSMUSP00000042625
Original member Current member NCBI NM_177710.4 NP_808378.2 Accepted alive Link to Nucleotide Sequence:NM_177710.4Link to Protein Sequence:NP_808378.2Re-query CCDS DB by Nucleotide ID:NM_177710Re-query CCDS DB by Protein ID:NP_808378Link to BLAST:NP_808378.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808378.2 1423 Q5SW75-1 1423 100% 0 0

Chromosomal Locations for CCDS 25076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77216453 77216515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77327453 77327496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77393050 77393153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77398205 77398269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77408126 77408247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77416415 77416483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77417466 77417531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77421216 77421410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77425301 77425394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77425523 77425651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77429786 77429832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77437626 77437772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77441858 77442058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77449388 77450222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77453390 77455480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4272 nt):
ATGGCTTTGGTCACGGTCCAGCGGTCGCCTACCCCCAGCACCACCTCCAGCCCTTGCGCCTCGGAGGCCG
ACAGTGGGGAGGAGGAATGCCGGTCACAGCCCAGAAGCATCAGCGAGAGCTTCTTAACTGTCAAAGGTGC
TGCCCTTTTTCTACCACGAGGGAATGGCTCGTCTACACCAAGAGTCAGCCACAGACGCAACAAGCATGCA
GGTGATCTCCAACAGCATCTTCAAGCAATGTTCATATTACTCCGCCCAGAAGACAACATAAGGCTGGCTG
TAAGACTGGAAAGTACTTACCAAAACCGAACACGCTATATGGTCGTGGTTTCAACTAATGGTAGACAAGA
CACTGAAGAAAGCATTGTCCTGGGAATGGATTTTTCTTCTAATGACAGTAGCACTTGTACCATGGGCTTG
GTCTTGCCTCTCTGGAGTGACACCCTAATTCATTTGGATGGTGATGGTGGGTTCAGCGTATCAACAGATA
ACAGAGTTCACATATTCAAACCTGTATCTGTGCAAGCAATGTGGTCTGCACTACAGAGTTTGCACAAGGC
TTGTGAAGTGGCCAGAATGCATAACTACTATCCAGGCAGCCTTTTTCTCACTTGGGTGAGTTATTACGAG
AGCCATATCAACTCAGATCAGTCCTCAGTCAATGAGTGGAATGCTATGCAGGATGTGCAGTCTCATCGGC
CTGACTCTCCAGCCCTCTTCACAGACATACCAACTGAACGTGAGCGAACAGAAAGGCTTATTAAGACTAA
ATTAAGGGAGATCATGATGCAAAAGGATTTGGAGAATATCACCTCCAAAGAGATACGCACGGAGCTGGAG
ATGCAGATGGTGTGCAACTTGCGAGAATTTAAGGAATTCATAGATAATGAAATGATCGTGATCCTTGGTC
AGATGGACAGTCCCACACAGATATTTGAGCATGTATTCCTGGGCTCAGAATGGAATGCCTCGAACTTAGA
GGACTTGCAGAACCGAGGGGTACGGTATATCTTGAATGTTACTCGAGAGATAGATAACTTCTTCCCTGGA
GTCTTTGAGTATCATAACATTCGAGTATATGATGAAGAAGCAACAGATCTCCTGGCTTACTGGAATGACA
CTTACAAATTCATCTCTAAAGCAAAGAAACATGGATCTAAATGTCTTGTGCACTGCAAAATGGGGGTGAG
TCGCTCAGCCTCCACTGTGATTGCCTATGCAATGAAGGAGTATGGATGGAATCTGGATCGAGCCTATGAC
TATGTGAAGGAAAGACGAACGGTGACCAAGCCTAACCCCAGCTTCATGAGACAACTGGAAGAATACCAAG
GGATCTTGCTGGCCAGCAAACAGCGGCATAACAAACTCTGGAGATCTCATTCAGATAGTGACCTTTCAGA
CCACCACGAACCCATCTGTAAACCTGGGCTCGAGCTCAACAAGAAGGAGATGACCACGTCAGCAGACCAG
ATCGCTGAGGTGAAGACTGTGGAGAACCTTGCTGCCATGCCTACCGTCTTTATGGAACATGTGGTCCCAC
AAGATGCAAATCAGAAAGGACTACACACCAAAGAAAGAGTCATCTGCTTGGAGTTTTCTTCACAAGAGTT
TCGTGCCGGACAGATTGAAGATGAATTAAATTTAAATGACATCAATGGATGCTCATCAGGGTGTTGTCTC
AGTGAATCAAAACTCCCTCTTGACAACTGCCATGCGTCTAAAGCCTTACTCCAACCTGGACAGGCCCCAG
ACATTGCCAACAAGTTCCCAGACTTAGCTGTGGAAGATCTGGAGACAGACGCACTGAAAGCAGACATGAA
TGTCCACCTACTGCCAATGGAAGAGTTGACATCTCGACTGAAAGACCTCCCCATGTCACCTGATCTGGAG
TCACCAAGCCCCCAAGCCAGTTGCCAAGCTGCCATCTCAGATTTTAGTACAGATCGTATTGACTTTTTTA
GTGCCCTGGAGAAATTTGTAGAGCTTTCTCAAGAAACCCGGTCTCGGTCTTTTTCTCACTCAAGGATAGA
AGAATTAGGTGGAGGAAGGAGTGAGGGCTGTCGTTTGTCAGTGATAGAAGTGGCAGCTTCAGAAATGGCA
GCTGATGACCAGAGAAGCAGCTCTTTGAGTAATACGCCCCACGCCTCTGAAGAGTCTTCTGTGGATGAGG
ACCAGTCGAAGGCAATCACCGAACTTGTCAGCCCAGACATCATCATGCAATCTCACTCAGAAAATGCAAT
TTCAGTCAAAGAAATTGTGACTGAAATTGAGTCCATTAGTCAAGGAGTTGGGCAGGTTCAGTTAAAAGGA
GACATCCTCTCTAACCCATGCCACACACCAAAGAAGAGCACCATTCATGAGCTGCCCCTGGAGAGGGTGC
CAGCCCCTGAGAGCAAACCTGGACATTGGGAGCAGGATGAGAGTTTCTGTAGTGTCCAGCCAGAACTAGC
TAGAGACTCAGGGAAGTGTGCCCCGGAGGAAGGCTGTCTGACCACACACTCATCCACAGCAGACTTGGAA
GAAGAAGAACCAGTTGAGGGGGAACATGACTGGGGCCCAGGGATGCACTCTGGTGCTAAGTGGTGCCCTG
GGTCTGTGAGGCGAGCCACCCTGGAGTTTGAAGAGCGCTTGCGACAAGAGCAAGAGAACCATGGTACAGC
CTCTGCAGGCCCCACATTATCCAATCGCAAAAACTCTAAGAATGATTCTTCTGTGGCAGACTTAATGCCA
AAATGGAAAAGTGATGAAACTACCCCAGAACATTCATTTTTCCTCAAAGAAGCCGAGCCGAGCAAGGGTA
AAGGGAAATGCAGTGGTTCTGAAGCCGGATCACTATCCCACTGTGAGCGTAATCCCACCATGCCAGACTG
TGAGCTGCTGGAGCATCATTCCTTGCCGGCTCCTCAGGACTGCCTAGGGTCAGATAGTAGAAGTAAGAAG
CAGGAAGGAGACCTAAAGAAGCAGAGGGCTGTGGTTCCAAACCAGGAATGTGACACACAGGCCATCCTTC
TCCCCCTTCCCAAGAAAATAGAAATCATTGAGTATACGCCGACAGTTACATCACTGGGTCACACCGAGCC
AGGAGGTGAGGCGACACCCAGCAAAGAGGGTGAGAAACAAGGACTGAGGAAAGTGAAGATGGAGCAGTCT
ATCACTATGTTTTGTGCGCTGGATGAAAATCTGAACAGGACTCTGGAGCCCAGTCAAGTTTCTCTGCATC
CCCAAGTGCTACCTCTGCCTCATTCTTCCTCAGAGTGTGACAGGCCCGCTGACCCAAACCCTATGTTAAG
TAGCCCGCAAGACAAAGGGGACTGCCCATCCACACCCTTCAAGACAGCAGCACCTTTTGTCAGCTGCAGT
ACCCAGGGAGCATCTTTCAGCTTGGATTATTTGCTTCCCCACTCTGTGGTTCACCTGGAAGGCTGCACAG
AGCAAAGCAGTGCCACTGACAATGAACTGTCTCCAGAGCAGGCTAGCTGGGAGGACAGCCGGGGGCATTT
CCTCTCCAGTGGTAGTGGAATGGCACACACATCCTCCCCATTAACTAACGAAGACCTAAGTTTAATTAAC
AAACTTGGTGACAGTGTTGGTGTGTTACAGAAAAAACTGGACCCGTCACCTGAAGCCTGTAGAATCCCAC
ATAGCTCTAGTAGTGAAAATATAAGAGATCTCAGCCACAGCCGTGGTGTGGTGAAGGAGCATGCTAAAGA
AATTGAGTCTCGAGTGATCTTCCAGGCAGGGTTTTCCAAAACATCCCAAATGAAGCGCTCAGCTTCCCTT
GCCAAGTTGGGTTACCTGGACCTTTGTAAAGACTACTTACCAGATAGAGAGCTTGTCTCCTCAGAATCCC
CTCATCTCAAATTGCTTCAGCCCTTCCTCAGAACAGACTCAGGCATGCATGCCTTGATGGCCCATGAGCC
CTCAGAAAGCGCAGGTGCCCAGCAGAACCCACAGCCCACCAAGTATTCTGTAGAGCAACTCAAAACATCA
GAGTGTATTGTGCAGAGCAAACCAGTGGAGAGGCCCAGTGTGCAGTATGCCAAAGAGTTTGGTTACAGTC
AGCAGTGTTTGCTCCCCAAGGCAAGACCAGAATTGACTAGTTCTGAAGGAGGCCTTCCTTTGCTACAGAC
ACAGGGTCTGCAGTACACAGGCCCCTCTCCAGGGCTGGCTGTGGCGCCCCGTCAGCAACATGGCAGAACT
CACCCCCTTAGAAGACTGAAAAGAGCAAATGATAAAAAACGGACAACCAACCCCTTCTATAACACCATGT
GA

Translation (1423 aa):
MALVTVQRSPTPSTTSSPCASEADSGEEECRSQPRSISESFLTVKGAALFLPRGNGSSTPRVSHRRNKHA
GDLQQHLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVSTNGRQDTEESIVLGMDFSSNDSSTCTMGL
VLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWSALQSLHKACEVARMHNYYPGSLFLTWVSYYE
SHINSDQSSVNEWNAMQDVQSHRPDSPALFTDIPTERERTERLIKTKLREIMMQKDLENITSKEIRTELE
MQMVCNLREFKEFIDNEMIVILGQMDSPTQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPG
VFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKMGVSRSASTVIAYAMKEYGWNLDRAYD
YVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSHSDSDLSDHHEPICKPGLELNKKEMTTSADQ
IAEVKTVENLAAMPTVFMEHVVPQDANQKGLHTKERVICLEFSSQEFRAGQIEDELNLNDINGCSSGCCL
SESKLPLDNCHASKALLQPGQAPDIANKFPDLAVEDLETDALKADMNVHLLPMEELTSRLKDLPMSPDLE
SPSPQASCQAAISDFSTDRIDFFSALEKFVELSQETRSRSFSHSRIEELGGGRSEGCRLSVIEVAASEMA
ADDQRSSSLSNTPHASEESSVDEDQSKAITELVSPDIIMQSHSENAISVKEIVTEIESISQGVGQVQLKG
DILSNPCHTPKKSTIHELPLERVPAPESKPGHWEQDESFCSVQPELARDSGKCAPEEGCLTTHSSTADLE
EEEPVEGEHDWGPGMHSGAKWCPGSVRRATLEFEERLRQEQENHGTASAGPTLSNRKNSKNDSSVADLMP
KWKSDETTPEHSFFLKEAEPSKGKGKCSGSEAGSLSHCERNPTMPDCELLEHHSLPAPQDCLGSDSRSKK
QEGDLKKQRAVVPNQECDTQAILLPLPKKIEIIEYTPTVTSLGHTEPGGEATPSKEGEKQGLRKVKMEQS
ITMFCALDENLNRTLEPSQVSLHPQVLPLPHSSSECDRPADPNPMLSSPQDKGDCPSTPFKTAAPFVSCS
TQGASFSLDYLLPHSVVHLEGCTEQSSATDNELSPEQASWEDSRGHFLSSGSGMAHTSSPLTNEDLSLIN
KLGDSVGVLQKKLDPSPEACRIPHSSSSENIRDLSHSRGVVKEHAKEIESRVIFQAGFSKTSQMKRSASL
AKLGYLDLCKDYLPDRELVSSESPHLKLLQPFLRTDSGMHALMAHEPSESAGAQQNPQPTKYSVEQLKTS
ECIVQSKPVERPSVQYAKEFGYSQQCLLPKARPELTSSEGGLPLLQTQGLQYTGPSPGLAVAPRQQHGRT
HPLRRLKRANDKKRTTNPFYNTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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