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Report for CCDS43713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43713.1 Public Homo sapiens 8 USP17L2 24 110 108 CCDS HistoryNCBI Gene:377630Re-query CCDS DB by CCDS ID:43713.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333796.4 ENSP00000333329.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333796.4Link to Ensembl Protein Viewer:ENSP00000333329.3Re-query CCDS DB by Nucleotide ID:ENST00000333796Re-query CCDS DB by Protein ID:ENSP00000333329
Original member Current member NCBI NM_201402.3 NP_958804.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201402.3Link to Protein Sequence:NP_958804.2Re-query CCDS DB by Nucleotide ID:NM_201402Re-query CCDS DB by Protein ID:NP_958804Link to BLAST:NP_958804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958804.2 530 Q6R6M4 530 100% 0 0

Chromosomal Locations for CCDS 43713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12137168 12138760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAGGACGACTCACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTC
GGCCAGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATCTGAGGC
CCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAGGAAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATGGGAAATACCTGCTACGAGAACGCTT
CCCTGCAGTGCCTGACATACACACCGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCTCAAACATG
TCAGCGTCCCAAGTGCTGCATGCTCTGTACTATGCAAGCTCACATCACATGGGCCCTCCACAGTCCTGGT
CATGTCATCCAGCCCTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGCCCATGAAT
TTCTCATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGCCACAAGCAGGTAGATCATCACTC
TAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTGCTGGAGATCTCAAATCAAGTGTCTCCACTGC
CACGGGATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCA
AGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAGAGAATGCCTATCATTGCGGTCTTTG
TCTCCAGAGGGCGCCGGCCTCCAAGACGTTAACTTTACACACTTCTGCCAAGGTCCTCATCCTTGTCTTG
AAGAGATTCTCCGATGTCACAGGCAACAAACTTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGC
AGCCATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACGACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCAAGGTCACTGCCTGTAGCATCACTTCTGTCCTGAGTCAACAGGCCTATGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTCGGCGCTGA
AGACACAGACAGGCGAGCAACGCAAGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCACCCGAGTTG
GACGAGCGCTTGGTGGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCCCCAAGAGCAAA
ACAAAACGAAGCCTGAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTCCCAACGTACTTGTGATTCA
TCAATCGAAATACAAGTGTGGGATGAAAAACCATCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGACGACCCGGACAGATCAGGAGTCCGTGAACACTGGCACCCTCGCTTCTCTGCAAGGGAGGACCAGGA
GATCCAAAGGGAAGAACAAACACAGCAAGAGGGCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSEARVDLCDDLAPVARQLAPRKKLPL
SSRRPAAVGAGLQNMGNTCYENASLQCLTYTPPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPG
HVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHC
HGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASKTLTLHTSAKVLILVL
KRFSDVTGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMD
DAKVTACSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL
DERLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLS
STTRTDQESVNTGTLASLQGRTRRSKGKNKHSKRALLVCQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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