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Report for CCDS78299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78299.1 Public Homo sapiens 8 USP17L4 24 110 108 CCDS HistoryNCBI Gene:645402Re-query CCDS DB by CCDS ID:78299.1Re-query CCDS DB by GeneID:645402See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 78299.1
This CCDS representation lacks full-length human transcript support. Its representation is therefore inferred, but it is supported by paralogous transcripts.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 78299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526929.1 ENSP00000485243.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526929.1Link to Ensembl Protein Viewer:ENSP00000485243.1Re-query CCDS DB by Nucleotide ID:ENST00000526929Re-query CCDS DB by Protein ID:ENSP00000485243
Original member Current member NCBI NM_001256874.1 NP_001243803.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256874.1Link to Protein Sequence:NP_001243803.1Re-query CCDS DB by Nucleotide ID:NM_001256874Re-query CCDS DB by Protein ID:NP_001243803Link to BLAST:NP_001243803.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243803.1 530 A6NCW7 530 100% 0 0

Chromosomal Locations for CCDS 78299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 7337115 7338707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGGGGACGACTCACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTC
GGCCAGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATCTGAGAC
CCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTCGCTCCCAGGGAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATGGGAAATACCTGCTACGAGAACGCTT
CCCTGCAGTGCCTGACATACACACTGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCTCAAACATG
TCAGCGTCCCAAGTGCTGCATGCTCTGTACTATGCAAGCTCACATCACATGGGCCCTCCACAGTCCTGGC
CATGTCATCCAGCCCTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGTCCATGAAT
TTCTCATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGCCACAAGCAGGTAGATCATCACTC
TAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTGCTGGAGATCTCAAATCAAGTGTCTCCACTGC
CACGGGATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCA
AGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAGAGAATGCCTATCATTGCGGTCTTTG
TCTCCAGAGGGCGCCGGCCTCCAACACGTTAACTTTACACACTTCTGCCAAGGTCCTCATCCTTGTCTTG
AAGAGATTCTCCGATGTCGCAGGCAACAAACTTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGC
AGCCATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACGACGGATATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCGAGGTCACTGTCTGTAGCATCACTTCTGTCCTGAGTCAACAGGCCTATGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTTGGCGCTGA
AGACACAGACAGGCCAGCAACGCAAGGAGAGCTCAAGAGAGACCACCCTTGCCTCCAGGTACCCGAGTTG
GACGAGCACTTGGTGGAAAGAGCCACTGAGGAAAGCACCTTAGACCACTGGAAATTCCCCCAAGAGCAAA
ACAAAATGAAGCCTGAGTTCAACGTCAGAAAAGTTGAAGGTACCCTGCCTCCCAACGTACTTGTGATTCA
TCAATCAAAATACAAGTGTGGGATGAAAAACCACCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGATGAACTCGACAGATCAGGAGTCCATGAACACTGGCACACTCGCTTCTCTGCAAGGGAGGACCAGGA
GATCCAAAGGGAAGAACAAACACAGCAAGAGATCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPL
SSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPG
HVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHC
HGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVL
KRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMD
DAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPEL
DEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLS
SMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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