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Report for CCDS26429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26429.1 Public Mus musculus 13 Serpinb1c 23 108 98 CCDS HistoryNCBI Gene:380839Re-query CCDS DB by CCDS ID:26429.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021834.10 ENSMUSP00000021834.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021834.10Link to Ensembl Protein Viewer:ENSMUSP00000021834.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021834Re-query CCDS DB by Protein ID:ENSMUSP00000021834
Original member Current member NCBI NM_173051.2 NP_766639.2 Accepted alive Link to Nucleotide Sequence:NM_173051.2Link to Protein Sequence:NP_766639.2Re-query CCDS DB by Nucleotide ID:NM_173051Re-query CCDS DB by Protein ID:NP_766639Link to BLAST:NP_766639.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766639.2 375 Q5SV42 375 100% 0 0

Chromosomal Locations for CCDS 26429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32881833 32882225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32883877 32884044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32884221 32884363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32886154 32886271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32888872 32889009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32896931 32897098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGGGCAGCTGAGTTCAGCCAACAACCTCTTTGCTTTGGAGCTGTTCCACACCCTGAATGAGAGCAACC
CCACAGGAAATACCATCTTCTCTCCCGTCAGCATTTCTTCTGCCTTGGCCATGGTCTATCTGGGGGCCAG
AGGCAGCACTGCAGCCCAACTCTCTAAGACTCTGCATTTTGACTCTGCTGAGGACATCCATTCACAGTTT
CAAAGCCTGACTGCTGAAGTGAGCAAGCGTGGAGCATCTCACACTCTGAAACTTGCTAACAGACTGTATG
GAGAGAAAACCTACAACTTCCTTCCTGAGTACTTGGCTTCAATCCAGAAAACGTACAGTGCTGACTTGGC
CCTTGTGGATTTTCAGCATGCTTCTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAAAGGTCAAACA
GAAGAGAAAATTCAGGAACTGTTTGCTGTGGGTGTGGTGGACAGTATGACTAAACTTGTACTAGTGAATG
CCACCTATTTCAAGGGAATGTGGCAGAAAAAATTCATGGCACGGGACACAACCGATGCTCCATTCCGACT
GAGTAAGAAAGTCACAAAAACAGTGAAGATGATGTATCTAAAGAATAATCTTCCATTTGGCTACATTCCA
GACCTGAAGTGCAAGGTGCTGGAGATGCCTTACCAGGGTGGAGAACTTAGCATGGTCATTCTGCTGCCTG
AAGACATTGAGGACGAGACCACAGGTCTTGAGGAGATTGAGAAACAATTAACTTTGGAAAAACTGCAAGA
ATGTGAGAACTTACAAAACATTGATGTCTGTGTCAAATTGCCCAAATTCAAGATGGAAGAGAGCTACATC
CTCAACTCTAACCTGGGCCAACTGGGAGTGCAGGATCTCTTTAGCAGCAGCAAAGCTGATCTCTCTGGCA
TGTCGGGATCCAGAGATCTTTTCATATCAAAAATTGTTCACAAGTCCTATGTGGAAGTGAATGAGGAGGG
AACAGAGACAGATGCTGCCATGCCAGGCACTGTTGTTGGATGCTGCCTGATGCCCATGGAATTCACGGTG
GACCATCCATTCCTTTTCTTCATTCGGCACAATCCCACGGCTCATGTGCTCTTCCTTGGCAGGGTTTGTT
CCCCATAG

Translation (375 aa):
MGQLSSANNLFALELFHTLNESNPTGNTIFSPVSISSALAMVYLGARGSTAAQLSKTLHFDSAEDIHSQF
QSLTAEVSKRGASHTLKLANRLYGEKTYNFLPEYLASIQKTYSADLALVDFQHASEDARKEINQWVKGQT
EEKIQELFAVGVVDSMTKLVLVNATYFKGMWQKKFMARDTTDAPFRLSKKVTKTVKMMYLKNNLPFGYIP
DLKCKVLEMPYQGGELSMVILLPEDIEDETTGLEEIEKQLTLEKLQECENLQNIDVCVKLPKFKMEESYI
LNSNLGQLGVQDLFSSSKADLSGMSGSRDLFISKIVHKSYVEVNEEGTETDAAMPGTVVGCCLMPMEFTV
DHPFLFFIRHNPTAHVLFLGRVCSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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