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Report for CCDS28985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28985.1 Public Mus musculus 17 Rmdn2 23 108 98 CCDS HistoryNCBI Gene:381110Re-query CCDS DB by CCDS ID:28985.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040368.2 ENSMUSP00000044543.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040368.2Link to Ensembl Protein Viewer:ENSMUSP00000044543.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040368Re-query CCDS DB by Protein ID:ENSMUSP00000044543
Original member Current member EBI ENSMUST00000225357.1 ENSMUSP00000153443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225357.1Link to Ensembl Protein Viewer:ENSMUSP00000153443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225357Re-query CCDS DB by Protein ID:ENSMUSP00000153443
Original member NCBI NM_001368314.1 NP_001355243.1 Updated not alive Link to Nucleotide Sequence:NM_001368314.1Link to Protein Sequence:NP_001355243.1Re-query CCDS DB by Nucleotide ID:NM_001368314Re-query CCDS DB by Protein ID:NP_001355243
Current member NCBI NM_001368314.2 NP_001355243.1 Accepted alive Link to Nucleotide Sequence:NM_001368314.2Link to Protein Sequence:NP_001355243.1Re-query CCDS DB by Nucleotide ID:NM_001368314Re-query CCDS DB by Protein ID:NP_001355243Link to BLAST:NP_001355243.1
Original member NCBI NM_201361.2 NP_958749.1 Updated not alive Link to Nucleotide Sequence:NM_201361.2Link to Protein Sequence:NP_958749.1Re-query CCDS DB by Nucleotide ID:NM_201361Re-query CCDS DB by Protein ID:NP_958749
Current member NCBI NM_201361.3 NP_958749.1 Accepted alive Link to Nucleotide Sequence:NM_201361.3Link to Protein Sequence:NP_958749.1Re-query CCDS DB by Nucleotide ID:NM_201361Re-query CCDS DB by Protein ID:NP_958749Link to BLAST:NP_958749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355243.1 410 Q8BSE0 410 100% 0 0
NP_958749.1 410 Q8BSE0 410 100% 0 0

Chromosomal Locations for CCDS 28985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79621321 79621772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79650302 79650476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79651699 79651801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79659413 79659473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79666871 79666946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79667951 79668028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79670557 79670655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79672350 79672403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79672493 79672573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79681633 79681686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGCCCCATTCCACAAACAAAGAGCTAATCCTTGGCATCATGGCGGGGACTGCTGGGATCAGCTTGCTGG
CCTTCTGGTACCACAAGGTCCTCAAGCCAAGGACGACCATGAACTTCCCTAAGCTTCTTTCTCTGGGTAA
GAAATTTGGTTCACTAACTCTGCCAGAGGAAAGCCACAGTGCGCAAGGAGCATCGGTGGTCTTTCAAAGG
AGGCAACTCCAGATCCTGGAAAAGCTAAACGAGCTACTGACCAACATGGAAGAACTGAAGGAGGAAATCA
GATTCCTTAAAGAGACAATTCCAAAGCTGGAGGAATGTATACAAGATGAATTCGGAGGGAAGGTGACAGT
TCATAAGATCAGTCCTCAGCACAGAGCGAGAAAAAAGAAGGGGACAACCGTTCAACGCTCAGCAACAAGT
AACAGCTCAGAGGAGGCAGAAAGTGAAGGGGGGTATATTACAGCTAACACGGACACAGAAGAACAGAACT
TCCCGTTCCCCAAGGCTCTTAACACACACATAGAGGAGCTAAAGTTGGATGTCCTCCTTCAGAAGGCAGA
CCATTTGCGGACAAATGAGTCTCACAAAATGGAGAGTTTTGAGCTACTCTGTGACCACAAGGAGAAGTTT
AGTGAAGAAACTGAGTTTCTGTGGCGCCTGGCCCGAGCCTATGGAGACATGTATGATCTATCCACAAGTA
CACAAGAAAAGAAGCATTATGCTAATATTGGAAAAACTTTAGGAGAGAGAGCTATTACCAGAGCGCCCAT
GAATGGACACTGCCATCTGTGGTATGCAGTTTTGTGTGGTTATGTATCTGAGTTTGAGGGCTTGCAAAAC
AAAATTAACTGTGGACATCTATTCAAGAAGCATCTAGAAATAGCCATCCAGCTTTTGCCTGAAGAACCCT
TATTATATTACCTCAAGGGAAGGTACTGTTATACAGTCTCAAGACTCAGCTGGATTGAGAAAAAAATGGC
TGCTACTCTGTTCGGAGAAATACCATATTCAACGGTTCATGAAGCTTTGCACAACTTCCTTAAGACTGAA
GAACTGCAACCTGGTTATTCCATGTCCAACTATATGTATACAGCCAAGTGTTATGTTGAACTTGGGGAAC
CTCAGGAGGCTTGTAAATTCTGTAACTTGGCATTGCTACTGCCTGTTGTCACCAAAGAGGACAAGGATGC
CCATAAAGAGGTGAAGAAAATGATCAGTTCTTTGAAGAGGTAA

Translation (410 aa):
MPHSTNKELILGIMAGTAGISLLAFWYHKVLKPRTTMNFPKLLSLGKKFGSLTLPEESHSAQGASVVFQR
RQLQILEKLNELLTNMEELKEEIRFLKETIPKLEECIQDEFGGKVTVHKISPQHRARKKKGTTVQRSATS
NSSEEAESEGGYITANTDTEEQNFPFPKALNTHIEELKLDVLLQKADHLRTNESHKMESFELLCDHKEKF
SEETEFLWRLARAYGDMYDLSTSTQEKKHYANIGKTLGERAITRAPMNGHCHLWYAVLCGYVSEFEGLQN
KINCGHLFKKHLEIAIQLLPEEPLLYYLKGRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTE
ELQPGYSMSNYMYTAKCYVELGEPQEACKFCNLALLLPVVTKEDKDAHKEVKKMISSLKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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