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Report for CCDS15197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15197.1 Public Mus musculus 1 Gal3st2 23 108 98 CCDS HistoryNCBI Gene:381334Re-query CCDS DB by CCDS ID:15197.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094663.3 ENSMUSP00000092250.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094663.3Link to Ensembl Protein Viewer:ENSMUSP00000092250.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094663Re-query CCDS DB by Protein ID:ENSMUSP00000092250
Original member NCBI NM_199366.4 NP_955398.3 Updated not alive Link to Nucleotide Sequence:NM_199366.4Link to Protein Sequence:NP_955398.3Re-query CCDS DB by Nucleotide ID:NM_199366Re-query CCDS DB by Protein ID:NP_955398
Current member NCBI NM_199366.5 NP_955398.3 Accepted alive Link to Nucleotide Sequence:NM_199366.5Link to Protein Sequence:NP_955398.3Re-query CCDS DB by Nucleotide ID:NM_199366Re-query CCDS DB by Protein ID:NP_955398Link to BLAST:NP_955398.3

Chromosomal Locations for CCDS 15197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93861594 93861619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93872455 93872541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93873590 93873848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93874271 93875089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGTCCATCCTGAGAGGCACACAGAGGTCCTTCCAGGTGGCACTCTGGTTCCTGGTCCTGGCTGTGTTCC
TCCTGGTTGGTTTCCTGCATGTGGACTTCAGACTACTTAAACCGGACAAGGTCCAGGAACCACCGGTCAC
AAACATCATGTTCCTCAAGACGCACAAGACAGCCAGCAGTACAATCCTCAACATCCTCTACCGCTTCTCA
GAGTCTCACAACCTATCCACAGCACTGCCCGAGGGCTCTAGAGTCCATCTGGGTTACCCCTGGTTTTTTG
TGACACGGTATGTGGAGGGCCTGAAGCAGGACGCCCACCTGCAGCATCACTTTAACATCATGTGCAACCA
CCTTCGGTTCAACTATCCTGAGGTGCAGAAAGTCATGCCCAGGGACACTTTCTACTTCTCCATCCTCCGG
AACCCAGTTTTCCAGCTGGAGTCCTCCTTCATCTACTATAAGGACTATGCACCTGCCTTCCAGAGAGCCA
AGAGCCTGGACGAATTCCTGGCAGATCCGTGGAAGTACTACAACGCTAGTGTGAGCCTGAAAAATGTCTA
TGCGAAAAACAACATGTGGTTTGATTTTGGTTTTGACAACAACGCCCCAGCAGACATGGACTATGTTCGC
AAGCGCCTTGCGGAGGTGGAGCAGCGATTCCATCTGGTGCTCATTGCAGACTACTTCGATGAGTCTATGG
TGCTGCTGCGCAGAAGGCTGCGCTGGCAGCTGGATGATGTCGTGTCCTTCAAGCTGAACGTGCGCAGCCA
GAGCACTGTCTCACACCTGACGCCTGAGAGCCAGGAGCGTGTCCGGCACTGGTGTGCGCTGGACTGGCAG
CTCTACCAGCATTTCAATCGCACGTTTTGGACCCAGCTGCATGCGGAGCTAAGCCCACGCCAGCTCACAG
AAGAGGTGGAGCAGCTGCGGGAGAGGCAGCGCGAGCTCATGGCCCTGTGTCTTCAGGATCCAGAGCCCAA
GAACCTGACACACATAGATGACCAGAATCTGCGTCCTTACCAGGGTGGGAAGGCCAATATTCTGGGCTAC
AACCTTAGGCATGGTCTGGACACCACCACACTGCATATCTGTCAGAGAATGGCGATGCCCGAGCTCCAGC
ACATGGCCCATATGTACTCTCTGCAGTTTCCCGACAAGACTCCCAAGGATATCCCATTCCTGAAAAAGTA
G

Translation (396 aa):
MSILRGTQRSFQVALWFLVLAVFLLVGFLHVDFRLLKPDKVQEPPVTNIMFLKTHKTASSTILNILYRFS
ESHNLSTALPEGSRVHLGYPWFFVTRYVEGLKQDAHLQHHFNIMCNHLRFNYPEVQKVMPRDTFYFSILR
NPVFQLESSFIYYKDYAPAFQRAKSLDEFLADPWKYYNASVSLKNVYAKNNMWFDFGFDNNAPADMDYVR
KRLAEVEQRFHLVLIADYFDESMVLLRRRLRWQLDDVVSFKLNVRSQSTVSHLTPESQERVRHWCALDWQ
LYQHFNRTFWTQLHAELSPRQLTEEVEQLRERQRELMALCLQDPEPKNLTHIDDQNLRPYQGGKANILGY
NLRHGLDTTTLHICQRMAMPELQHMAHMYSLQFPDKTPKDIPFLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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