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Report for CCDS16922.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16922.2 Public Mus musculus 2 Bpifb4 23 108 98 CCDS HistoryNCBI Gene:381399Re-query CCDS DB by CCDS ID:16922.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16922.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. The update adds a putative signal peptide to the protein, as predicted by SignalP 3.0.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16922.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109757.7 ENSMUSP00000105379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109757.7Link to Ensembl Protein Viewer:ENSMUSP00000105379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109757Re-query CCDS DB by Protein ID:ENSMUSP00000105379
Original member Current member EBI ENSMUST00000109759.8 ENSMUSP00000105381.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109759.8Link to Ensembl Protein Viewer:ENSMUSP00000105381.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109759Re-query CCDS DB by Protein ID:ENSMUSP00000105381
Original member Current member NCBI NM_001034875.3 NP_001030047.2 Accepted alive Link to Nucleotide Sequence:NM_001034875.3Link to Protein Sequence:NP_001030047.2Re-query CCDS DB by Nucleotide ID:NM_001034875Re-query CCDS DB by Protein ID:NP_001030047Link to BLAST:NP_001030047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030047.2 617 A2BGH0-1 617 100% 0 0

Chromosomal Locations for CCDS 16922.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153940877 153940982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153941844 153941906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153942543 153943056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153943985 153944089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153944718 153944861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153947207 153947270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153947624 153947684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153948606 153948697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153950187 153950390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153952115 153952168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153954263 153954433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153957130 153957197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153957719 153957761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153959650 153959713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153961516 153961592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153963583 153963606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGTGGACTGCGTGGTGTGTGGCTGCTCTGTCAGTGGCAGCTGTGTGTGGTATCCGCCAAGACACAACCA
CAGTCCTCAGGGTTACAAAAGATGTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTGACGCCTT
CCGCTCCGCCCTGAGGGAGGTGCCCGTGGGTGTCGGTGGTGTCCCGTACAACGACTTCCATGTCCGAGAG
CCTCCCCCCAAATACACCAATGGCAGACAGCTTGGTGGCAATTACAAATATGGTCACATTAAGGCGAACG
ACAATAGAGCTCAGCTGGGGGGCAAGTACCGCTATGGGGAGATCCTGGACTCCGATGGGAGCCTCAGGGA
CCTACGGCATGAAGACTACCGTCCTCCAGACAGTGCCTACCACCGCGGCTCTGGGCGGTACAGATCCGCC
GCAGACTCATCCTCGGTGGGCAGGCTCTACCGGCGCGAACTGAGGCCTGGAGAGATCCCAGCTGGTGTGG
CCACTGGGGCCCTGGGCCCCGGAGGTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGC
AGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGATGGAGGACTTCTTGGAGGAGGAGGTGTG
CTCGGTGTGCTGGGTGAAGGAGGCATCCTAAGCACCGTACAAGGCATCACTGGGTTGCGCATCGTGGAAC
TTACCCTTCCCCGGGTGTCCGTGAGACTCCTGCCCGGTGTGGGTGTCTACCTGAGCTTGTACACCCGTGT
GGCCATCAACGGAAGGAGCCTCATCGGCTTCCTGGATATTGCAGTGGAGGTAAACATCACGGCCAAAGTT
CGGCTGACCATGGACCGCACAGGCTACCCACGGTTGGTCATTGAGCGCTGTGACACCCTCCTGGGAGGTA
TCAAAGTCAAGCTGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGTGCTGGCCAA
TGTACTCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTC
GTGGACTCTTTGGTGCCTCTGGGAATACTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGA
CTGGGGAATTCCTTGAGTTGGACCTTAATACTCTAGTTGGGGAGGCAGGAGGTGACCTCATTGACTACCC
CCTGGGGCGGCCAGCTATATTGCCCAGGCCACAGATGCCAGAACTACCCCCCATGGGCGACAACACCAAC
TCCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAATGG
ACATTGACATCACTGATGGCATGTTTGAAGATCTCCCTCCACTTACCACTTCCACACTGGGGGCCTTGAT
TCCCAAGGTGTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCA
ACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCAGC
CCAACGATGTAGAGACCACTATCTGCCTCATCGATGTGGACACAGACCTCTTGGCTTCATTTTCTGTGGA
AGGAGATAAGCTCATGATCGACGCCAAGCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAACGTGGGC
AACTTTGATGTGTTCATCTTGGAAATGTTGGTTGAGAAGATCTTTGACCTAGCGTTTATGCCTGCAATGA
ATGCTATACTGGGTTCTGGAGTCCCCCTGCCCAAAATCCTCAACATTGACTTCAGCAACGCAGACATTGA
TGTGTTGGAGGACCTTCTGGTGCTGAGCACATGA

Translation (617 aa):
MWTAWCVAALSVAAVCGIRQDTTTVLRVTKDVLGNAISGTIQKSDAFRSALREVPVGVGGVPYNDFHVRE
PPPKYTNGRQLGGNYKYGHIKANDNRAQLGGKYRYGEILDSDGSLRDLRHEDYRPPDSAYHRGSGRYRSA
ADSSSVGRLYRRELRPGEIPAGVATGALGPGGLLGTGGMLANEGILAGQGGLLGGGGLLGDGGLLGGGGV
LGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGRSLIGFLDIAVEVNITAKV
RLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGL
VDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAILPRPQMPELPPMGDNTN
SQLAISANFLSSVLTMLQKQGAMDIDITDGMFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPP
TVTLQKDKALVKVFATSEVVVSQPNDVETTICLIDVDTDLLASFSVEGDKLMIDAKLDKTSLNLRTSNVG
NFDVFILEMLVEKIFDLAFMPAMNAILGSGVPLPKILNIDFSNADIDVLEDLLVLST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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