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Report for CCDS51281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51281.1 Public Mus musculus 4 Ccdc24 23 108 98 CCDS HistoryNCBI Gene:381546Re-query CCDS DB by CCDS ID:51281.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106422.8 ENSMUSP00000102030.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106422.8Link to Ensembl Protein Viewer:ENSMUSP00000102030.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106422Re-query CCDS DB by Protein ID:ENSMUSP00000102030
Original member Current member EBI ENSMUST00000164853.7 ENSMUSP00000132114.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164853.7Link to Ensembl Protein Viewer:ENSMUSP00000132114.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164853Re-query CCDS DB by Protein ID:ENSMUSP00000132114
Original member Current member NCBI NM_001034876.1 NP_001030048.1 Accepted alive Link to Nucleotide Sequence:NM_001034876.1Link to Protein Sequence:NP_001030048.1Re-query CCDS DB by Nucleotide ID:NM_001034876Re-query CCDS DB by Protein ID:NP_001030048Link to BLAST:NP_001030048.1

Chromosomal Locations for CCDS 51281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117869624 117869828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117869910 117869988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117870106 117870175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117870516 117870570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117871064 117871189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117871747 117871860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117871989 117872146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGCTAAAGGCGCTGCTCCAAGAGATCCAGTCTTCTCAAGTTTCCAACTCTGACCCTCCCTCCCTACTGG
CACCACCCCCCCTCTTGAGGGACCTCATTCGCCAAGAACTCCGACAGTTACTCCAAGGCCTCCGCCTTAA
GGCTATCAGTGAGGGCAGGGACCAGACCCAGATGTGGGCCCAGTATAGTCCCAGGGTCCTTCGCTTTGCC
TTAGAGGATACCAGGTGTGACTCAACACAACAGGAACTCCCGATGAGAGCTGATGAGCCCAGGGCTGGAA
TGAACAACACAGAGAGGGTGATGGTAACCTCACCTGTCAGCACCTGTCCCAGGGACCTCACTGTCATCAA
GGACCAACTGAATGTGTCTAATATTGACCAAGTTGTCAGACACCTGAGAAGCCTTCTGGAGGAAGAGTGT
CACATGTTGCAGAACGAGATCTCTGACCTGCAGCACTGTCTGGAAATGGAGCAGATGCAGGCTTGCCAGC
CCTCTAAGGACACCCAAATGCCTACCCTGGGAGAGATTAAGGATCAGAAGGCGGCCATGGAACGGGAGCT
ACAGGTCTCTCTGGGGCCTTCCTGTACCGCTGCCAAGCACAGGCAGAAGCCTTTGAGGTCATCCATTCCC
AGCCTTAGACCCTTCCCTTGTCTCCATGGCTACATGCCTACACCTCCTTCGGAGCGCTGCCCCCACCCTC
AAGGACAGACAAGCACCCGCCGCTGGGGACGGCAACTTCGGTACAGCTATCGCAAAGAGACAACTTCCAC
ATCAGTTTCCAGTGCAGCATCCCAGGCACCGACCTGA

Translation (268 aa):
MLKALLQEIQSSQVSNSDPPSLLAPPPLLRDLIRQELRQLLQGLRLKAISEGRDQTQMWAQYSPRVLRFA
LEDTRCDSTQQELPMRADEPRAGMNNTERVMVTSPVSTCPRDLTVIKDQLNVSNIDQVVRHLRSLLEEEC
HMLQNEISDLQHCLEMEQMQACQPSKDTQMPTLGEIKDQKAAMERELQVSLGPSCTAAKHRQKPLRSSIP
SLRPFPCLHGYMPTPPSERCPHPQGQTSTRRWGRQLRYSYRKETTSTSVSSAASQAPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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