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Report for CCDS51450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51450.1 Public Mus musculus 5 Adgrf3 23 108 98 CCDS HistoryNCBI Gene:381628Re-query CCDS DB by CCDS ID:51450.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088117.10 ENSMUSP00000085440.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088117.10Link to Ensembl Protein Viewer:ENSMUSP00000085440.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088117Re-query CCDS DB by Protein ID:ENSMUSP00000085440
Original member Current member NCBI NM_001014394.2 NP_001014416.2 Accepted alive Link to Nucleotide Sequence:NM_001014394.2Link to Protein Sequence:NP_001014416.2Re-query CCDS DB by Nucleotide ID:NM_001014394Re-query CCDS DB by Protein ID:NP_001014416Link to BLAST:NP_001014416.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014416.2 991 Q58Y75 991 100% 0 0

Chromosomal Locations for CCDS 51450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30193537 30193561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30195043 30195098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30195497 30195559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30195650 30195691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30196239 30197615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30198363 30198539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30199017 30199213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30199398 30199541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30200440 30200646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30202239 30202457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30202957 30203133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30203487 30203627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30204341 30204401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30205616 30205705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGTCCTCTCTAGCTCTCTCCCAGCTGCTCCTGGCCGTGACTCTTCCCCTGCTGGAGTTGGAGCCAACAT
TTGTCCCCACAGCCCAATCAGAGCTCAGTCCATATGGAGGGAAATCTGGGCAGCAACTGAACCAGTACAG
TGGAGAAGGGGAATCAGTGCTGGTCTCCAGCTATGTGCATCTGGAATTTTCAAGCACAGCCTGGCCACAG
GAGCTCTCTAAAAACTTTACTCTTCCTACCGCCCTGGCAGTCCTTCCCCCGAAAACGCTTACTGGCCTTG
GCCTTACAACAGAGTGTCGTGCTAACCACAGCGGAACCAGCCTCTGCACTTGCCACCCTGGCTACCAATG
GAATGCCACACTTTGTTCCCTTTACCCACACTGCTGGGGCCGCAGGTCAGAAAGAGATTCCTGTATGTGT
CGCAGCTTCCACGGTCCTGTTACTGGCTACTGCCAGTTGCTGCCACCTGTTCCTGCAAACCTGATACTGG
ACTCCCAGCTGCAAATGCACGGCAACACCCTGAACCTCATTCTCCTCAAGAAAGAGGAAGCCACAAACCT
GAGATGGTTCTTGAGACACTCAAAGAACCACACACCCATCAGCCTATGGCCAGGGACCAATGTGTTGCAG
ACGTCCAGTGAGGGCCAGTCTGGCCTTCGTGTCGCCCGCATGTCCCGTCATTGGGCAGGTGAGTACGAGA
GCATCTTCGAAGCCCAGGGGTTCAGGTGGAGGCTGCGGCAGCTGGTGAAGGTGCCCTTGCAGGAGGAAGA
AGTCGTTCGACTCCCAGACGCCCTGTCCATCTCCTGTACTGCCTCCACTGGCTTTCAGCTGAGCTGCTGC
ATCCCACTTACAACAGACTACACTGCTACCTGGAGTCCTGGGGAGGACAGCCAAGCCTCCTTGCAAAAAA
TGTCGGATTCCCAATGCTTTGTGCTAGCTGTTCCGCACTGCCCAGCAACCAATACCACATACACCTGTAC
CCTTCAGAGTCAGAACCTGCCTCCTCTCGTGGCTCCTGTCTCTATCACGATTATCCAGGATGGAGACACT
ACCTGCCCTGAGGACTTCTCAGTGGTTAGCTGGAATGTCACCAAGGCTGGCTTCGTGGCACAGGCCCCAT
GTCCTGTGAATAAGAAAGGTGTGGTAAAGAGGCTCTGTGGGACTGATGGCATCTGGAGGCCAGTCCAGAA
CACCTGCACAGAAGCAAAGATCCTAACCTTGTGTCTTAAAGCCAAGCTGCTGGAAGGCCAGGGAAAGCCC
TACGAGGAAGTGCCATGGATCTTGAGTGAGCTGCAAGAGCAGGTGGGCGTGGCCAGCACCCCCTCTGACT
TATGGGAAATGCTGCACACTGTGACCTTACTGGCCAAGGTGGTAGCAGAGACAAGCACAGAGCTCACAGG
CAGTGCTCTGAAGGACCTCCTGACGACCACAGACAAGATTCTAGACGCGAACATCAGCGCTCTGTGGACT
CTGGCCCAGGCCCAGGAGCCCTCCATGGGCTCAGATTTCCTGAAGGCTGTGGAGACCTTGGTTCACAGCT
TAAGACCACAACAGCATCCTTTTTCCTTCAGCTCAGCTAATGTGCTACTGCAGAGCCAGCTCCTCAGACA
CTCCTCTCCTCCTGGCTACCAAATGTCCTTCTCCACCTGGCCCCTGCTGCAGGCACGGATTCCATGGCAT
TCACTGGCCCCACTGGTCCATAGTGGAACTAACGTCAGTATTACTAGCCTAGTACTGCAAAAGCTGGACT
ACCGGCTGCCCTCAAACTACACACAAGGGCTGTGGAACACCCCATACACCACCCCTGGGCTGATCCTTGT
GGTCTCCATAACAGCAGACGGCCAGGCCTTCACGCAGGCAGAAGTTATCATGGACTATGAAGACATGAAT
GGAACCCTTCACTGTGTGTTCTGGGACCACAGGGTCTTCCAGGGTCAGGGAGGTTGGTCAGATGAAGGGT
GTGAGGTACATGCAGCCAATGCCAGCATCACTCAGTGCATTTGCCAGCATCTCACAGCCTTTTCCATCCT
CATGTCCCAACACACTGTCCCAGAAAATCCCACCCTGGACCTGCTGAGCCAGGTGGGTACGGGGGCTTCC
GTCCTGGCTTTGCTCGTCTGCCTGGCTATTTACGGGCTGGTGTGGAGAGTGGTGGTCCGGAACAAAGTCG
CCTTCTTCCGCCATACCACCCTGTTTAACATGGTGATCTGCTTGCTGGTCGCAGACACATGCTTCTTGGG
AAGCCCCTTCCTTCCTTCAGGCTACCACAGCCTGATCTGCCTAGTCACTGCTTTCCTGTGTCACTTTTTC
TACCTGGCCACCTTTTTCTGGATGCTGGCACAGGCCCTGGTGCTGGCCCACCAGCTGCTTTTTGTCTTCC
ACCAGCTGTCCAAGCACGTAGTCCTCTCACTGATGGTGATGCTGGGCTACCTGTGCCCACTGGGGTTTGC
GGGTGTCACCCTGGGCCTCTACTTGCCTCAAAGGAAATACCTGTGGGAGGGGAAATGCTTTCTGAACGGA
GGTGGCGTCATGCTGTACAGCTTCAGTGAGCCAGTGCTGGCCATCGTCGGTGTCAACGGGCTGGTCCTTG
TCATCGCTGTGCTGAAGCTGCTGCGACCTTCACTGTCAGAGGGGCCCACAGTGGAGAAGCGCCAAGCTCT
TGTGGGGGTGCTTAAAGCCCTGCTTATTCTCACACCCATCTTTGGCCTCACTTGGGGACTGGGCGTGGCC
ACTCTGTTTGATGGCTCCATAGTCTCTCACTACGCCTTTTCCATTCTCAACAGCCTCCAGGGTGTCTTCA
TATTAGTGTTTGGCTGCCTCACAGACAAGAAGGTACTAGAGGCCTTGCGCAAACGATTGCGAGGCAGCCG
GTCCTCTAACTCTGCCATCTCCATGGTCACAAATGAAACCTATACCTCAGAACACAGCAAAGAAAGAAGT
GAGCCTGCCAGTTATGAAGAAAGGATGACTGATTGA

Translation (991 aa):
MSSLALSQLLLAVTLPLLELEPTFVPTAQSELSPYGGKSGQQLNQYSGEGESVLVSSYVHLEFSSTAWPQ
ELSKNFTLPTALAVLPPKTLTGLGLTTECRANHSGTSLCTCHPGYQWNATLCSLYPHCWGRRSERDSCMC
RSFHGPVTGYCQLLPPVPANLILDSQLQMHGNTLNLILLKKEEATNLRWFLRHSKNHTPISLWPGTNVLQ
TSSEGQSGLRVARMSRHWAGEYESIFEAQGFRWRLRQLVKVPLQEEEVVRLPDALSISCTASTGFQLSCC
IPLTTDYTATWSPGEDSQASLQKMSDSQCFVLAVPHCPATNTTYTCTLQSQNLPPLVAPVSITIIQDGDT
TCPEDFSVVSWNVTKAGFVAQAPCPVNKKGVVKRLCGTDGIWRPVQNTCTEAKILTLCLKAKLLEGQGKP
YEEVPWILSELQEQVGVASTPSDLWEMLHTVTLLAKVVAETSTELTGSALKDLLTTTDKILDANISALWT
LAQAQEPSMGSDFLKAVETLVHSLRPQQHPFSFSSANVLLQSQLLRHSSPPGYQMSFSTWPLLQARIPWH
SLAPLVHSGTNVSITSLVLQKLDYRLPSNYTQGLWNTPYTTPGLILVVSITADGQAFTQAEVIMDYEDMN
GTLHCVFWDHRVFQGQGGWSDEGCEVHAANASITQCICQHLTAFSILMSQHTVPENPTLDLLSQVGTGAS
VLALLVCLAIYGLVWRVVVRNKVAFFRHTTLFNMVICLLVADTCFLGSPFLPSGYHSLICLVTAFLCHFF
YLATFFWMLAQALVLAHQLLFVFHQLSKHVVLSLMVMLGYLCPLGFAGVTLGLYLPQRKYLWEGKCFLNG
GGVMLYSFSEPVLAIVGVNGLVLVIAVLKLLRPSLSEGPTVEKRQALVGVLKALLILTPIFGLTWGLGVA
TLFDGSIVSHYAFSILNSLQGVFILVFGCLTDKKVLEALRKRLRGSRSSNSAISMVTNETYTSEHSKERS
EPASYEERMTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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