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Report for CCDS19888.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19888.2 Public Mus musculus 5 N4bp2l2 23 108 98 CCDS HistoryNCBI Gene:381695Re-query CCDS DB by CCDS ID:19888.2See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 19888.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118316.7 ENSMUSP00000113895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118316.7Link to Ensembl Protein Viewer:ENSMUSP00000113895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118316Re-query CCDS DB by Protein ID:ENSMUSP00000113895
Original member Current member NCBI NM_201369.3 NP_958757.2 Accepted alive Link to Nucleotide Sequence:NM_201369.3Link to Protein Sequence:NP_958757.2Re-query CCDS DB by Nucleotide ID:NM_201369Re-query CCDS DB by Protein ID:NP_958757Link to BLAST:NP_958757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958757.2 575 Q8JZS6-1 575 100% 0 0

Chromosomal Locations for CCDS 19888.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150643114 150643315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150647001 150647077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150647460 150647548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150650615 150650739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150661279 150662513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGCCTTATAGTGAGGTTGAAGCTAAGTTTTTGGGACCTGGAAAAGAACAAACAAGAGAACCATGCTATA
AAAAATTGAAATCAGCTGCAGATGATGGTGTTTCCCCCCTTCGAGGTGGTCCTGATATTCACAGAATCCA
AGAAAAACCCAGAAATAATAGGGTCGCGGTGGCCACCATTAACTTCAGAAGACGTGTTTGTCCTCAGGAA
GACAAAACCAGTACAGATGTGTTAAAGCCATTGCACAAGGAGATGCCTGGTGATAAACTGGGTGGTAGTG
AATCCATCGGTTCCCCAGCTTTGCAGGATGGAAAGCCTTCACCACTGGCCAAGGATGATGAAATCTATAG
CACAAGTAAAGCATTCATAGGCCCCATTTACAAACCCCCTGAGAAAAAGAAATGCCGTGAAAGGAAGAGT
GAGACAGATACTTTCAGTAGTATAGATAGCAAAAGAAGACAAGAAGAAAAACAGAAATCTAACTCCAAAA
AATTGGAGATGGATACAGAATTATCCCAGTTTTACAAAGAAATTGAAGAGCTGGAAAATGAAAATGAAGC
TTCCCAAGGCAGTTGTACGGAACCAGAACCTTCCGAAGAACCAATTATTTCTTATGACTGGGCCTGTAAT
ACTCTAAAGTCTGAGGAGGAAAACAAAGATCTCAGTGATGTTCTTCAGTCACATTGTGGTTATCAAGAGT
ACTTGGAGGATGAACCAGACTATCCCTGTGATGAGCAGTTGATGCCTGCATTTTGTGAAACTTCATTTCC
TTCCTTCAGGCCTGAATGGCAGTCCATGCATCCTTTTGTCATACCCCATGATCCTCTTTCCAGTTTTAAT
TATTTTAATTTTCAAAGATTTGGTACCCCACTACATCCATCACCAGATGTTTTCCATGGTCGAGATGACT
CTCAGATGCAGAATGGGTGTTACGTAGACAGTTATCAGGATGGCTGGAGCTGCTTGACGTTTGATCAGAA
CGATGAATATGCTAACTATGATGTGACTAGCAATAATGTTCATCCCTTTAGAAATGGCTGCAGTGTACAA
GATGAAAGTGTGAATAATGGTTTCTGTGAAATCCGAGAGTGCTGGCAAGATCCTTCCATGGACAAGCATA
ATGAAACAGACAGGTTTGTGAACCAGTGGTTTCAAGAGGAGAAATTAAATAAATTGCAGAAATTGCTTAT
TCTTTTGCGAGGCCTCCCCGGTTCTGGAAAAACAACATTGTCTCGAATTCTGCTTGGTCAGAGTCGTGAT
GGCATCGTGTTCAGCACTGATGACTATTTTCATCATCAAGATGGGTACAGGTACAATGTTAATCAACTTG
GTGATGCCCATGACTGGAACCAGAACAGAGCAAAACAAGCTATTGACCAAGGGAGATCTCCAGTTATAAT
AGACAACACTAATACACAAGCCTGGGAAATGAAACCGTATGTAGAAATGGCCATAGGAAAAGGATACAGA
GTAGAGTTTCATGAACCGGAAACTTGGTGGAAGTTTGATCCTGAAGAATTAGAAAAGAGGAATAAGCATG
GTGTGTCTAGAAAGAAGATTGCCCAGATGCTGGATCGCTACGAATTTCAAATGTCCATCTCCATTGTGAT
GAACTCAGTGGAACCAACACAGAAAAGCATACAAAGACCCCTTCCTCTCGAGGGGGAGCAGAGGTGGGGA
GGCTCTCTAGGCTCACATAGTCAAGTATCTATCGCAGATGACTATTAA

Translation (575 aa):
MPYSEVEAKFLGPGKEQTREPCYKKLKSAADDGVSPLRGGPDIHRIQEKPRNNRVAVATINFRRRVCPQE
DKTSTDVLKPLHKEMPGDKLGGSESIGSPALQDGKPSPLAKDDEIYSTSKAFIGPIYKPPEKKKCRERKS
ETDTFSSIDSKRRQEEKQKSNSKKLEMDTELSQFYKEIEELENENEASQGSCTEPEPSEEPIISYDWACN
TLKSEEENKDLSDVLQSHCGYQEYLEDEPDYPCDEQLMPAFCETSFPSFRPEWQSMHPFVIPHDPLSSFN
YFNFQRFGTPLHPSPDVFHGRDDSQMQNGCYVDSYQDGWSCLTFDQNDEYANYDVTSNNVHPFRNGCSVQ
DESVNNGFCEIRECWQDPSMDKHNETDRFVNQWFQEEKLNKLQKLLILLRGLPGSGKTTLSRILLGQSRD
GIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQNRAKQAIDQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYR
VEFHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEFQMSISIVMNSVEPTQKSIQRPLPLEGEQRWG
GSLGSHSQVSIADDY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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