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Report for CCDS23110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23110.1 Public Mus musculus 9 Cenatac 23 108 98 CCDS HistoryNCBI Gene:382073Re-query CCDS DB by CCDS ID:23110.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053286.8 ENSMUSP00000053216.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053286.8Link to Ensembl Protein Viewer:ENSMUSP00000053216.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053286Re-query CCDS DB by Protein ID:ENSMUSP00000053216
Original member Current member NCBI NM_201372.4 NP_958760.2 Accepted alive Link to Nucleotide Sequence:NM_201372.4Link to Protein Sequence:NP_958760.2Re-query CCDS DB by Nucleotide ID:NM_201372Re-query CCDS DB by Protein ID:NP_958760Link to BLAST:NP_958760.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958760.2 332 Q4VA36-1 332 100% 0 0

Chromosomal Locations for CCDS 23110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44410304 44410364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44410448 44410580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44410691 44410780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44412453 44412483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44412917 44413022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44413137 44413201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44413471 44413533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44413607 44413673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44417111 44417209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44417633 44417796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44417869 44417988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCGCCACCGCAGCGATGTCCTCTGTGTCGGCAAACTTTCTTCTGTGGTCGCGGTCACGTCTACAGCC
ACAAGCACCAGCGGCAGTTGAAGGGGGCTCTGGAGCGGCTTCTACCGCAGGTGGAGGCCGCCCGCCGGGC
CGTCCGCGCCGCCCAGGTGGAGCGCTATGTCCCCGAGCACGATCGGTGCTGTTGGTGCCCGTGCTGTGGC
TGCGAAGTGCGAAAACACCTGAGCCATGGCAACCTGACAGTGCTACACGGGGGTCTGCTGGAACATCTGG
CCAGCCCAGAGCACAAGAAAGCCACCAACAAATTCTGGTGGGAGAACAAGGCCAATGCCCAGATGAAAGA
GAAGTTTCTGATCTCCCCCCAGGATTATGCACGGTTTAAGAAGTCCATGGTGAAGGGCTTGGATTCCTAT
GAGGAAAAGGAGGACGAGGTGATTAAAGAGATGGCAGCTCAGATCCGTGAGGTAGAACAGAGTCGGCAGG
AAGTGGTCCGATCTGTCTTAGAGCCTCAGGCAGAGTCAGATCCAGAAGAGGGCTCTTCAGCACCTGAAAG
TTGGAAAGCGACCAACGGCCATGTAGCCTCCAGCTCACAGCAGGTATCACACTTGGCCTTGCAACCTGTT
GCAGAGCTTGATTGGATGGAGACAGGACAGCAACTAACATTCATTGGCCATCAGGATACACCCGGAATTG
GTAACATTCACTCAGGTGCCACACCTCCCTGGATGATCCAAGAGGAGGAGCACAGCTCTGGCAGCCTCCC
AATAGGACCCTCCTATGAGGAATTTCTCAAAGAAAAGGAAAAACAAAAACTGAAGAAACTCCCTCCAGAT
AGAGTTGGCGCCAACTTTGACCACAGTTCCAACACCAGTGCAGGCTGGTTGCCTTCTTTTGGCAGAGTCT
GGAATAATGGACGCCGCTGGCAGTCCAGGCATCAATTCAAAACCGAAGCTGCAACAAGAAGCAAGCAACC
ACGTAAAGGGAAAAGCTGA

Translation (332 aa):
MAPPQRCPLCRQTFFCGRGHVYSHKHQRQLKGALERLLPQVEAARRAVRAAQVERYVPEHDRCCWCPCCG
CEVRKHLSHGNLTVLHGGLLEHLASPEHKKATNKFWWENKANAQMKEKFLISPQDYARFKKSMVKGLDSY
EEKEDEVIKEMAAQIREVEQSRQEVVRSVLEPQAESDPEEGSSAPESWKATNGHVASSSQQVSHLALQPV
AELDWMETGQQLTFIGHQDTPGIGNIHSGATPPWMIQEEEHSSGSLPIGPSYEEFLKEKEKQKLKKLPPD
RVGANFDHSSNTSAGWLPSFGRVWNNGRRWQSRHQFKTEAATRSKQPRKGKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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